Strain Fitness in Erwinia amylovora T8 around OLJFJH_07160

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07150 and OLJFJH_07155 are separated by 15 nucleotidesOLJFJH_07155 and OLJFJH_07160 are separated by 414 nucleotidesOLJFJH_07160 and OLJFJH_07165 are separated by 34 nucleotides OLJFJH_07150: OLJFJH_07150 - 50S ribosomal protein L21, at 1,457,143 to 1,457,454 _07150 OLJFJH_07155: OLJFJH_07155 - 50S ribosomal protein L27, at 1,457,470 to 1,457,727 _07155 OLJFJH_07160: OLJFJH_07160 - hypothetical protein, at 1,458,142 to 1,458,465 _07160 OLJFJH_07165: OLJFJH_07165 - Obg family GTPase CgtA, at 1,458,500 to 1,459,678 _07165 Position (kb) 1458 1459Strain fitness (log2 ratio) -2 -1 0 1at 1457.898 kb on + strandat 1457.898 kb on + strandat 1458.134 kb on + strandat 1458.143 kb on + strandat 1458.356 kb on + strand, within OLJFJH_07160at 1458.361 kb on + strand, within OLJFJH_07160at 1458.379 kb on + strand, within OLJFJH_07160at 1458.379 kb on + strand, within OLJFJH_07160

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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1,457,898 + -1.3
1,457,898 + -0.4
1,458,134 + -0.8
1,458,143 + -0.7
1,458,356 + OLJFJH_07160 0.66 -1.8
1,458,361 + OLJFJH_07160 0.68 -2.3
1,458,379 + OLJFJH_07160 0.73 -0.4
1,458,379 + OLJFJH_07160 0.73 -1.4

Or see this region's nucleotide sequence