Strain Fitness in Erwinia amylovora T8 around OLJFJH_07140

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07135 and OLJFJH_07140 are separated by 49 nucleotidesOLJFJH_07140 and OLJFJH_07145 are separated by 309 nucleotides OLJFJH_07135: OLJFJH_07135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,454,029 to 1,455,291 _07135 OLJFJH_07140: OLJFJH_07140 - DNA-binding protein, at 1,455,341 to 1,455,601 _07140 OLJFJH_07145: OLJFJH_07145 - octaprenyl diphosphate synthase, at 1,455,911 to 1,456,885 _07145 Position (kb) 1455 1456Strain fitness (log2 ratio) -2 -1 0 1at 1455.305 kb on - strandat 1455.415 kb on + strand, within OLJFJH_07140at 1455.416 kb on - strand, within OLJFJH_07140at 1455.416 kb on - strand, within OLJFJH_07140at 1455.416 kb on - strand, within OLJFJH_07140at 1455.416 kb on - strand, within OLJFJH_07140at 1455.477 kb on - strand, within OLJFJH_07140at 1455.477 kb on - strand, within OLJFJH_07140at 1455.551 kb on + strand, within OLJFJH_07140at 1455.552 kb on - strand, within OLJFJH_07140at 1455.641 kb on + strandat 1455.646 kb on + strandat 1455.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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1,455,305 - -0.4
1,455,415 + OLJFJH_07140 0.28 -0.4
1,455,416 - OLJFJH_07140 0.29 -1.1
1,455,416 - OLJFJH_07140 0.29 +0.8
1,455,416 - OLJFJH_07140 0.29 -1.9
1,455,416 - OLJFJH_07140 0.29 -1.0
1,455,477 - OLJFJH_07140 0.52 -1.1
1,455,477 - OLJFJH_07140 0.52 -0.9
1,455,551 + OLJFJH_07140 0.80 -0.6
1,455,552 - OLJFJH_07140 0.81 -0.3
1,455,641 + -1.4
1,455,646 + +0.3
1,455,657 - -0.6

Or see this region's nucleotide sequence