Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04565 and OLJFJH_04570 are separated by 746 nucleotides OLJFJH_04570 and OLJFJH_04575 are separated by 48 nucleotides OLJFJH_04575 and OLJFJH_04580 are separated by 258 nucleotides
OLJFJH_04565: OLJFJH_04565 - Glutathione oxidoreductase, at 890,602 to 891,957
_04565
OLJFJH_04570: OLJFJH_04570 - hypothetical protein, at 892,704 to 892,955
_04570
OLJFJH_04575: OLJFJH_04575 - Transposase (Partial), at 893,004 to 893,126
_04575
OLJFJH_04580: OLJFJH_04580 - alpha/beta hydrolase, at 893,385 to 894,206
_04580
Position (kb) 892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 891.712 kb on + strand, within OLJFJH_04565 at 891.712 kb on + strand, within OLJFJH_04565 at 891.713 kb on - strand, within OLJFJH_04565 at 891.736 kb on + strand, within OLJFJH_04565 at 891.736 kb on + strand, within OLJFJH_04565 at 891.736 kb on + strand, within OLJFJH_04565 at 891.737 kb on - strand, within OLJFJH_04565 at 891.737 kb on - strand, within OLJFJH_04565 at 891.737 kb on - strand, within OLJFJH_04565 at 892.017 kb on + strand at 892.017 kb on + strand at 892.017 kb on + strand at 892.018 kb on - strand at 892.049 kb on + strand at 892.078 kb on - strand at 892.078 kb on - strand at 892.079 kb on + strand at 892.079 kb on + strand at 892.080 kb on - strand at 892.080 kb on - strand at 892.083 kb on + strand at 892.083 kb on + strand at 892.083 kb on + strand at 892.083 kb on + strand at 892.084 kb on - strand at 892.084 kb on - strand at 892.084 kb on - strand at 892.113 kb on - strand at 892.366 kb on - strand at 892.366 kb on - strand at 892.366 kb on - strand at 892.516 kb on + strand at 892.530 kb on - strand at 892.576 kb on + strand at 892.580 kb on + strand at 892.580 kb on + strand at 892.580 kb on + strand at 892.583 kb on + strand at 892.588 kb on + strand at 892.589 kb on - strand at 892.593 kb on - strand at 892.605 kb on + strand at 892.698 kb on + strand at 892.698 kb on + strand at 892.698 kb on + strand at 892.698 kb on + strand at 892.699 kb on - strand at 892.754 kb on + strand, within OLJFJH_04570 at 892.789 kb on + strand, within OLJFJH_04570 at 892.789 kb on + strand, within OLJFJH_04570 at 892.790 kb on - strand, within OLJFJH_04570 at 892.790 kb on - strand, within OLJFJH_04570 at 892.941 kb on - strand at 892.946 kb on + strand at 892.947 kb on - strand at 892.977 kb on + strand at 892.984 kb on + strand at 893.072 kb on - strand, within OLJFJH_04575 at 893.124 kb on + strand at 893.176 kb on - strand at 893.231 kb on - strand at 893.422 kb on - strand at 893.425 kb on - strand at 893.476 kb on + strand, within OLJFJH_04580 at 893.476 kb on + strand, within OLJFJH_04580 at 893.535 kb on - strand, within OLJFJH_04580 at 893.586 kb on + strand, within OLJFJH_04580 at 893.588 kb on + strand, within OLJFJH_04580 at 893.588 kb on + strand, within OLJFJH_04580 at 893.588 kb on + strand, within OLJFJH_04580 at 893.588 kb on + strand, within OLJFJH_04580 at 893.588 kb on + strand, within OLJFJH_04580 at 893.588 kb on + strand, within OLJFJH_04580 at 893.589 kb on - strand, within OLJFJH_04580 at 893.592 kb on + strand, within OLJFJH_04580 at 893.592 kb on + strand, within OLJFJH_04580 at 893.592 kb on + strand, within OLJFJH_04580 at 893.592 kb on + strand, within OLJFJH_04580 at 893.592 kb on + strand, within OLJFJH_04580 at 893.593 kb on - strand, within OLJFJH_04580 at 893.593 kb on - strand, within OLJFJH_04580 at 893.593 kb on - strand, within OLJFJH_04580 at 893.597 kb on + strand, within OLJFJH_04580 at 893.598 kb on - strand, within OLJFJH_04580 at 893.612 kb on + strand, within OLJFJH_04580 at 893.612 kb on + strand, within OLJFJH_04580 at 893.613 kb on - strand, within OLJFJH_04580 at 893.695 kb on - strand, within OLJFJH_04580 at 893.695 kb on - strand, within OLJFJH_04580 at 893.695 kb on - strand, within OLJFJH_04580 at 893.874 kb on + strand, within OLJFJH_04580
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9 remove 891,712 + OLJFJH_04565 0.82 +1.8 891,712 + OLJFJH_04565 0.82 +0.4 891,713 - OLJFJH_04565 0.82 +0.1 891,736 + OLJFJH_04565 0.84 +0.2 891,736 + OLJFJH_04565 0.84 -1.0 891,736 + OLJFJH_04565 0.84 -0.4 891,737 - OLJFJH_04565 0.84 -0.9 891,737 - OLJFJH_04565 0.84 +0.3 891,737 - OLJFJH_04565 0.84 -0.7 892,017 + -0.7 892,017 + -1.9 892,017 + +0.4 892,018 - +0.4 892,049 + +1.0 892,078 - +1.1 892,078 - -0.4 892,079 + -0.1 892,079 + -1.8 892,080 - +0.4 892,080 - -1.3 892,083 + +0.0 892,083 + +1.0 892,083 + +1.6 892,083 + -0.4 892,084 - +0.8 892,084 - +0.4 892,084 - -1.1 892,113 - +0.1 892,366 - +0.2 892,366 - +2.5 892,366 - -0.3 892,516 + +1.1 892,530 - +2.5 892,576 + +0.2 892,580 + -0.4 892,580 + +1.3 892,580 + +2.8 892,583 + -0.0 892,588 + +0.2 892,589 - -0.8 892,593 - -1.0 892,605 + -0.7 892,698 + -1.1 892,698 + -0.2 892,698 + -1.8 892,698 + -0.3 892,699 - +0.1 892,754 + OLJFJH_04570 0.20 +1.1 892,789 + OLJFJH_04570 0.34 -1.4 892,789 + OLJFJH_04570 0.34 -0.8 892,790 - OLJFJH_04570 0.34 -0.8 892,790 - OLJFJH_04570 0.34 +1.2 892,941 - -0.3 892,946 + -0.4 892,947 - +1.1 892,977 + -1.7 892,984 + -0.3 893,072 - OLJFJH_04575 0.55 +1.4 893,124 + -0.6 893,176 - -0.7 893,231 - -0.7 893,422 - -0.5 893,425 - -0.9 893,476 + OLJFJH_04580 0.11 -3.1 893,476 + OLJFJH_04580 0.11 +0.1 893,535 - OLJFJH_04580 0.18 -0.3 893,586 + OLJFJH_04580 0.24 -1.0 893,588 + OLJFJH_04580 0.25 -0.7 893,588 + OLJFJH_04580 0.25 +0.2 893,588 + OLJFJH_04580 0.25 +0.9 893,588 + OLJFJH_04580 0.25 +1.9 893,588 + OLJFJH_04580 0.25 -2.5 893,588 + OLJFJH_04580 0.25 -0.9 893,589 - OLJFJH_04580 0.25 -0.5 893,592 + OLJFJH_04580 0.25 +0.4 893,592 + OLJFJH_04580 0.25 +0.6 893,592 + OLJFJH_04580 0.25 -0.7 893,592 + OLJFJH_04580 0.25 +0.2 893,592 + OLJFJH_04580 0.25 +0.9 893,593 - OLJFJH_04580 0.25 +3.8 893,593 - OLJFJH_04580 0.25 -0.3 893,593 - OLJFJH_04580 0.25 -1.0 893,597 + OLJFJH_04580 0.26 -0.2 893,598 - OLJFJH_04580 0.26 -0.3 893,612 + OLJFJH_04580 0.28 -0.9 893,612 + OLJFJH_04580 0.28 -0.9 893,613 - OLJFJH_04580 0.28 +2.0 893,695 - OLJFJH_04580 0.38 -0.7 893,695 - OLJFJH_04580 0.38 -0.8 893,695 - OLJFJH_04580 0.38 -0.1 893,874 + OLJFJH_04580 0.59 -0.2
Or see this region's nucleotide sequence