Strain Fitness in Erwinia amylovora T8 around OLJFJH_04005

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04000 and OLJFJH_04005 overlap by 1 nucleotidesOLJFJH_04005 and OLJFJH_04010 are separated by 108 nucleotides OLJFJH_04000: OLJFJH_04000 - hydrolase, at 761,315 to 762,331 _04000 OLJFJH_04005: OLJFJH_04005 - YheU family protein, at 762,331 to 762,549 _04005 OLJFJH_04010: OLJFJH_04010 - phosphoribulokinase, at 762,658 to 763,527 _04010 Position (kb) 762 763Strain fitness (log2 ratio) -2 -1 0 1 2 3at 761.530 kb on + strand, within OLJFJH_04000at 761.684 kb on + strand, within OLJFJH_04000at 761.684 kb on + strand, within OLJFJH_04000at 761.684 kb on + strand, within OLJFJH_04000at 761.684 kb on + strand, within OLJFJH_04000at 761.685 kb on - strand, within OLJFJH_04000at 761.685 kb on - strand, within OLJFJH_04000at 761.685 kb on - strand, within OLJFJH_04000at 761.685 kb on - strand, within OLJFJH_04000at 761.685 kb on - strand, within OLJFJH_04000at 761.715 kb on - strand, within OLJFJH_04000at 761.789 kb on - strand, within OLJFJH_04000at 761.789 kb on - strand, within OLJFJH_04000at 762.216 kb on - strand, within OLJFJH_04000at 762.310 kb on + strandat 762.523 kb on - strand, within OLJFJH_04005at 762.523 kb on - strand, within OLJFJH_04005at 762.565 kb on + strandat 762.565 kb on + strandat 762.566 kb on - strandat 762.566 kb on - strandat 762.566 kb on - strandat 762.567 kb on + strandat 762.567 kb on + strandat 762.567 kb on + strandat 762.568 kb on - strandat 762.568 kb on - strandat 762.617 kb on - strandat 762.649 kb on + strandat 762.649 kb on + strandat 762.650 kb on - strandat 762.650 kb on - strandat 762.650 kb on - strandat 762.650 kb on - strandat 762.652 kb on + strandat 762.652 kb on + strandat 762.652 kb on + strandat 762.652 kb on + strandat 762.657 kb on + strandat 762.658 kb on - strandat 762.658 kb on - strandat 762.658 kb on - strandat 762.658 kb on - strandat 762.773 kb on + strand, within OLJFJH_04010at 762.774 kb on - strand, within OLJFJH_04010at 762.841 kb on - strand, within OLJFJH_04010at 762.860 kb on - strand, within OLJFJH_04010at 762.900 kb on + strand, within OLJFJH_04010at 762.901 kb on - strand, within OLJFJH_04010at 762.901 kb on - strand, within OLJFJH_04010at 762.914 kb on - strand, within OLJFJH_04010at 762.946 kb on + strand, within OLJFJH_04010at 762.946 kb on + strand, within OLJFJH_04010at 762.946 kb on + strand, within OLJFJH_04010at 762.947 kb on - strand, within OLJFJH_04010at 762.954 kb on + strand, within OLJFJH_04010at 762.955 kb on - strand, within OLJFJH_04010at 762.958 kb on + strand, within OLJFJH_04010at 762.958 kb on + strand, within OLJFJH_04010at 763.042 kb on + strand, within OLJFJH_04010at 763.043 kb on - strand, within OLJFJH_04010at 763.043 kb on - strand, within OLJFJH_04010at 763.225 kb on + strand, within OLJFJH_04010at 763.225 kb on + strand, within OLJFJH_04010at 763.225 kb on + strand, within OLJFJH_04010at 763.225 kb on + strand, within OLJFJH_04010at 763.226 kb on - strand, within OLJFJH_04010at 763.226 kb on - strand, within OLJFJH_04010at 763.226 kb on - strand, within OLJFJH_04010at 763.236 kb on + strand, within OLJFJH_04010at 763.426 kb on - strand, within OLJFJH_04010at 763.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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761,530 + OLJFJH_04000 0.21 +0.7
761,684 + OLJFJH_04000 0.36 -0.4
761,684 + OLJFJH_04000 0.36 -0.5
761,684 + OLJFJH_04000 0.36 +0.3
761,684 + OLJFJH_04000 0.36 +1.6
761,685 - OLJFJH_04000 0.36 -0.1
761,685 - OLJFJH_04000 0.36 -0.4
761,685 - OLJFJH_04000 0.36 -1.3
761,685 - OLJFJH_04000 0.36 +0.1
761,685 - OLJFJH_04000 0.36 +0.5
761,715 - OLJFJH_04000 0.39 -0.3
761,789 - OLJFJH_04000 0.47 -0.5
761,789 - OLJFJH_04000 0.47 -0.3
762,216 - OLJFJH_04000 0.89 +1.3
762,310 + -0.2
762,523 - OLJFJH_04005 0.88 -0.6
762,523 - OLJFJH_04005 0.88 -1.0
762,565 + -1.3
762,565 + -0.1
762,566 - +1.0
762,566 - +0.8
762,566 - +1.1
762,567 + +0.3
762,567 + -1.1
762,567 + -0.3
762,568 - +1.4
762,568 - -0.8
762,617 - -0.7
762,649 + -1.5
762,649 + -1.2
762,650 - +0.1
762,650 - -0.3
762,650 - -1.1
762,650 - +0.5
762,652 + -1.5
762,652 + -0.5
762,652 + -0.2
762,652 + -0.7
762,657 + -0.5
762,658 - -1.6
762,658 - +0.0
762,658 - +1.2
762,658 - -0.5
762,773 + OLJFJH_04010 0.13 +1.5
762,774 - OLJFJH_04010 0.13 +3.2
762,841 - OLJFJH_04010 0.21 -1.9
762,860 - OLJFJH_04010 0.23 -1.2
762,900 + OLJFJH_04010 0.28 -0.1
762,901 - OLJFJH_04010 0.28 -1.5
762,901 - OLJFJH_04010 0.28 +0.7
762,914 - OLJFJH_04010 0.29 -0.5
762,946 + OLJFJH_04010 0.33 -0.9
762,946 + OLJFJH_04010 0.33 -0.7
762,946 + OLJFJH_04010 0.33 -1.1
762,947 - OLJFJH_04010 0.33 -0.9
762,954 + OLJFJH_04010 0.34 -0.2
762,955 - OLJFJH_04010 0.34 +0.3
762,958 + OLJFJH_04010 0.34 -0.4
762,958 + OLJFJH_04010 0.34 -0.9
763,042 + OLJFJH_04010 0.44 +3.7
763,043 - OLJFJH_04010 0.44 -1.1
763,043 - OLJFJH_04010 0.44 -0.5
763,225 + OLJFJH_04010 0.65 -0.6
763,225 + OLJFJH_04010 0.65 -1.2
763,225 + OLJFJH_04010 0.65 -0.5
763,225 + OLJFJH_04010 0.65 -2.4
763,226 - OLJFJH_04010 0.65 -0.8
763,226 - OLJFJH_04010 0.65 -0.9
763,226 - OLJFJH_04010 0.65 -0.1
763,236 + OLJFJH_04010 0.66 -0.6
763,426 - OLJFJH_04010 0.88 +0.8
763,548 - -1.5

Or see this region's nucleotide sequence