Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03685 and OLJFJH_03690 are separated by 11 nucleotides OLJFJH_03690 and OLJFJH_03695 overlap by 17 nucleotides OLJFJH_03695 and OLJFJH_03700 overlap by 20 nucleotides OLJFJH_03700 and OLJFJH_03705 overlap by 29 nucleotides
OLJFJH_03685: OLJFJH_03685 - shikimate dehydrogenase, at 714,979 to 715,797
_03685
OLJFJH_03690: OLJFJH_03690 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 715,809 to 716,381
_03690
OLJFJH_03695: OLJFJH_03695 - DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains, at 716,365 to 716,973
_03695
OLJFJH_03700: OLJFJH_03700 - DUF494 domain-containing protein, at 716,954 to 717,427
_03700
OLJFJH_03705: OLJFJH_03705 - DNA-protecting protein DprA, at 717,399 to 718,523
_03705
Position (kb) 716
717 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 715.798 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 716.399 kb on - strand at 716.711 kb on - strand, within OLJFJH_03695 at 716.761 kb on - strand, within OLJFJH_03695 at 717.100 kb on + strand, within OLJFJH_03700 at 717.101 kb on - strand, within OLJFJH_03700 at 717.164 kb on - strand, within OLJFJH_03700 at 717.210 kb on + strand, within OLJFJH_03700 at 717.210 kb on + strand, within OLJFJH_03700 at 717.306 kb on + strand, within OLJFJH_03700 at 717.306 kb on + strand, within OLJFJH_03700 at 717.306 kb on + strand, within OLJFJH_03700 at 717.393 kb on + strand at 717.393 kb on + strand at 717.393 kb on + strand at 717.393 kb on + strand at 717.394 kb on - strand at 717.394 kb on - strand at 717.394 kb on - strand at 717.394 kb on - strand at 717.394 kb on - strand at 717.394 kb on - strand at 717.404 kb on + strand at 717.408 kb on + strand at 717.408 kb on + strand at 717.409 kb on - strand at 717.409 kb on - strand at 717.409 kb on - strand at 717.409 kb on - strand at 717.416 kb on + strand at 717.416 kb on + strand at 717.416 kb on + strand at 717.417 kb on - strand at 717.417 kb on - strand at 717.417 kb on - strand at 717.463 kb on - strand at 717.573 kb on + strand, within OLJFJH_03705 at 717.646 kb on - strand, within OLJFJH_03705 at 717.689 kb on + strand, within OLJFJH_03705 at 717.690 kb on - strand, within OLJFJH_03705 at 717.690 kb on - strand, within OLJFJH_03705 at 717.692 kb on + strand, within OLJFJH_03705 at 717.693 kb on - strand, within OLJFJH_03705 at 717.693 kb on - strand, within OLJFJH_03705 at 717.695 kb on + strand, within OLJFJH_03705 at 717.695 kb on + strand, within OLJFJH_03705 at 717.696 kb on - strand, within OLJFJH_03705 at 717.696 kb on - strand, within OLJFJH_03705 at 717.696 kb on - strand, within OLJFJH_03705 at 717.782 kb on - strand, within OLJFJH_03705 at 717.849 kb on + strand, within OLJFJH_03705 at 717.849 kb on + strand, within OLJFJH_03705 at 717.850 kb on - strand, within OLJFJH_03705 at 717.881 kb on + strand, within OLJFJH_03705 at 717.881 kb on + strand, within OLJFJH_03705
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9 remove 715,798 - -0.4 715,798 - +2.9 715,798 - -0.8 715,798 - +0.1 716,399 - +0.7 716,711 - OLJFJH_03695 0.57 -1.1 716,761 - OLJFJH_03695 0.65 -0.4 717,100 + OLJFJH_03700 0.31 -0.6 717,101 - OLJFJH_03700 0.31 +0.1 717,164 - OLJFJH_03700 0.44 -0.4 717,210 + OLJFJH_03700 0.54 -0.2 717,210 + OLJFJH_03700 0.54 -0.6 717,306 + OLJFJH_03700 0.74 +0.1 717,306 + OLJFJH_03700 0.74 -0.7 717,306 + OLJFJH_03700 0.74 -0.6 717,393 + -1.4 717,393 + +1.7 717,393 + +1.7 717,393 + -1.3 717,394 - +0.7 717,394 - -2.1 717,394 - -0.1 717,394 - -1.4 717,394 - -1.5 717,394 - -0.4 717,404 + -2.1 717,408 + -1.6 717,408 + +0.4 717,409 - +4.2 717,409 - -1.7 717,409 - +0.4 717,409 - +0.5 717,416 + -0.4 717,416 + +0.8 717,416 + -1.2 717,417 - -2.4 717,417 - -0.8 717,417 - -2.4 717,463 - -0.7 717,573 + OLJFJH_03705 0.15 -0.4 717,646 - OLJFJH_03705 0.22 -0.6 717,689 + OLJFJH_03705 0.26 -0.6 717,690 - OLJFJH_03705 0.26 +0.2 717,690 - OLJFJH_03705 0.26 -3.8 717,692 + OLJFJH_03705 0.26 -0.2 717,693 - OLJFJH_03705 0.26 -0.4 717,693 - OLJFJH_03705 0.26 +0.4 717,695 + OLJFJH_03705 0.26 -0.5 717,695 + OLJFJH_03705 0.26 -1.2 717,696 - OLJFJH_03705 0.26 -0.2 717,696 - OLJFJH_03705 0.26 +0.2 717,696 - OLJFJH_03705 0.26 +2.3 717,782 - OLJFJH_03705 0.34 -0.6 717,849 + OLJFJH_03705 0.40 -0.4 717,849 + OLJFJH_03705 0.40 +0.2 717,850 - OLJFJH_03705 0.40 -1.2 717,881 + OLJFJH_03705 0.43 +0.4 717,881 + OLJFJH_03705 0.43 -0.2
Or see this region's nucleotide sequence