Strain Fitness in Erwinia amylovora T8 around OLJFJH_03470

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03465 and OLJFJH_03470 are separated by 226 nucleotidesOLJFJH_03470 and OLJFJH_03475 are separated by 156 nucleotides OLJFJH_03465: OLJFJH_03465 - quinone oxidoreductase, at 670,600 to 671,580 _03465 OLJFJH_03470: OLJFJH_03470 - envelope stress response protein PspG, at 671,807 to 672,040 _03470 OLJFJH_03475: OLJFJH_03475 - tRNA dihydrouridine(20/20a) synthase DusA, at 672,197 to 673,246 _03475 Position (kb) 671 672 673Strain fitness (log2 ratio) -2 -1 0 1 2 3at 670.833 kb on - strand, within OLJFJH_03465at 670.879 kb on + strand, within OLJFJH_03465at 670.879 kb on + strand, within OLJFJH_03465at 670.879 kb on + strand, within OLJFJH_03465at 670.984 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.002 kb on + strand, within OLJFJH_03465at 671.003 kb on - strand, within OLJFJH_03465at 671.003 kb on - strand, within OLJFJH_03465at 671.111 kb on + strand, within OLJFJH_03465at 671.111 kb on + strand, within OLJFJH_03465at 671.166 kb on - strand, within OLJFJH_03465at 671.236 kb on + strand, within OLJFJH_03465at 671.374 kb on + strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.375 kb on - strand, within OLJFJH_03465at 671.406 kb on + strand, within OLJFJH_03465at 671.406 kb on + strand, within OLJFJH_03465at 671.407 kb on - strand, within OLJFJH_03465at 671.407 kb on - strand, within OLJFJH_03465at 671.473 kb on - strand, within OLJFJH_03465at 671.583 kb on + strandat 671.584 kb on - strandat 671.584 kb on - strandat 671.584 kb on - strandat 671.648 kb on + strandat 671.649 kb on - strandat 671.723 kb on - strandat 671.746 kb on + strandat 671.845 kb on + strand, within OLJFJH_03470at 671.846 kb on - strand, within OLJFJH_03470at 671.851 kb on - strand, within OLJFJH_03470at 672.229 kb on + strandat 672.229 kb on + strandat 672.360 kb on - strand, within OLJFJH_03475at 672.360 kb on - strand, within OLJFJH_03475at 672.363 kb on + strand, within OLJFJH_03475at 672.364 kb on - strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.391 kb on + strand, within OLJFJH_03475at 672.392 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.394 kb on - strand, within OLJFJH_03475at 672.400 kb on - strand, within OLJFJH_03475at 672.443 kb on - strand, within OLJFJH_03475at 672.443 kb on - strand, within OLJFJH_03475at 672.530 kb on + strand, within OLJFJH_03475at 672.530 kb on + strand, within OLJFJH_03475at 672.531 kb on - strand, within OLJFJH_03475at 672.560 kb on + strand, within OLJFJH_03475

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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670,833 - OLJFJH_03465 0.24 +0.7
670,879 + OLJFJH_03465 0.28 +0.8
670,879 + OLJFJH_03465 0.28 +0.8
670,879 + OLJFJH_03465 0.28 -0.4
670,984 + OLJFJH_03465 0.39 -0.1
671,002 + OLJFJH_03465 0.41 -0.3
671,002 + OLJFJH_03465 0.41 +0.8
671,002 + OLJFJH_03465 0.41 -0.4
671,002 + OLJFJH_03465 0.41 +0.3
671,003 - OLJFJH_03465 0.41 +0.1
671,003 - OLJFJH_03465 0.41 -0.1
671,111 + OLJFJH_03465 0.52 -0.4
671,111 + OLJFJH_03465 0.52 +1.0
671,166 - OLJFJH_03465 0.58 +0.4
671,236 + OLJFJH_03465 0.65 -0.3
671,374 + OLJFJH_03465 0.79 -0.3
671,375 - OLJFJH_03465 0.79 +0.4
671,375 - OLJFJH_03465 0.79 +2.4
671,375 - OLJFJH_03465 0.79 +0.2
671,375 - OLJFJH_03465 0.79 -0.8
671,406 + OLJFJH_03465 0.82 -0.1
671,406 + OLJFJH_03465 0.82 +0.5
671,407 - OLJFJH_03465 0.82 +0.7
671,407 - OLJFJH_03465 0.82 +1.4
671,473 - OLJFJH_03465 0.89 -0.8
671,583 + -0.4
671,584 - +1.6
671,584 - -0.2
671,584 - -0.1
671,648 + -0.1
671,649 - -0.6
671,723 - -0.8
671,746 + -0.2
671,845 + OLJFJH_03470 0.16 -0.7
671,846 - OLJFJH_03470 0.17 -1.1
671,851 - OLJFJH_03470 0.19 -0.9
672,229 + +0.4
672,229 + -0.7
672,360 - OLJFJH_03475 0.16 +0.7
672,360 - OLJFJH_03475 0.16 -2.5
672,363 + OLJFJH_03475 0.16 +0.8
672,364 - OLJFJH_03475 0.16 +0.1
672,391 + OLJFJH_03475 0.18 -0.7
672,391 + OLJFJH_03475 0.18 +2.9
672,391 + OLJFJH_03475 0.18 -0.7
672,391 + OLJFJH_03475 0.18 -0.3
672,392 - OLJFJH_03475 0.19 -0.6
672,394 - OLJFJH_03475 0.19 +1.4
672,394 - OLJFJH_03475 0.19 +0.1
672,394 - OLJFJH_03475 0.19 -0.1
672,394 - OLJFJH_03475 0.19 +1.3
672,394 - OLJFJH_03475 0.19 -0.8
672,400 - OLJFJH_03475 0.19 +0.5
672,443 - OLJFJH_03475 0.23 -0.6
672,443 - OLJFJH_03475 0.23 -1.5
672,530 + OLJFJH_03475 0.32 -1.1
672,530 + OLJFJH_03475 0.32 -0.3
672,531 - OLJFJH_03475 0.32 +0.4
672,560 + OLJFJH_03475 0.35 +0.7

Or see this region's nucleotide sequence