Strain Fitness in Erwinia amylovora T8 around OLJFJH_03200

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03195 and OLJFJH_03200 are separated by 79 nucleotidesOLJFJH_03200 and OLJFJH_03205 are separated by 462 nucleotides OLJFJH_03195: OLJFJH_03195 - transcriptional regulator, at 594,072 to 596,426 _03195 OLJFJH_03200: OLJFJH_03200 - TonB-dependent siderophore receptor, at 596,506 to 598,623 _03200 OLJFJH_03205: OLJFJH_03205 - DUF4354 domain-containing protein, at 599,086 to 599,466 _03205 Position (kb) 596 597 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 595.509 kb on + strand, within OLJFJH_03195at 595.509 kb on + strand, within OLJFJH_03195at 595.548 kb on - strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.569 kb on + strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.570 kb on - strand, within OLJFJH_03195at 595.571 kb on + strand, within OLJFJH_03195at 595.571 kb on + strand, within OLJFJH_03195at 595.571 kb on + strand, within OLJFJH_03195at 595.572 kb on - strand, within OLJFJH_03195at 595.572 kb on - strand, within OLJFJH_03195at 595.572 kb on - strand, within OLJFJH_03195at 595.725 kb on + strand, within OLJFJH_03195at 595.758 kb on - strand, within OLJFJH_03195at 595.896 kb on + strand, within OLJFJH_03195at 595.935 kb on + strand, within OLJFJH_03195at 595.936 kb on - strand, within OLJFJH_03195at 595.936 kb on - strand, within OLJFJH_03195at 595.956 kb on - strand, within OLJFJH_03195at 596.014 kb on - strand, within OLJFJH_03195at 596.015 kb on + strand, within OLJFJH_03195at 596.239 kb on - strandat 596.284 kb on + strandat 596.285 kb on + strandat 596.285 kb on + strandat 596.285 kb on + strandat 596.538 kb on + strandat 596.539 kb on - strandat 596.574 kb on - strandat 596.588 kb on + strandat 596.617 kb on + strandat 596.618 kb on - strandat 596.687 kb on - strandat 596.687 kb on - strandat 596.745 kb on - strand, within OLJFJH_03200at 596.862 kb on + strand, within OLJFJH_03200at 596.862 kb on + strand, within OLJFJH_03200at 596.863 kb on - strand, within OLJFJH_03200at 596.864 kb on + strand, within OLJFJH_03200at 596.865 kb on - strand, within OLJFJH_03200at 596.869 kb on + strand, within OLJFJH_03200at 596.869 kb on + strand, within OLJFJH_03200at 596.869 kb on + strand, within OLJFJH_03200at 596.889 kb on + strand, within OLJFJH_03200at 596.890 kb on - strand, within OLJFJH_03200at 596.972 kb on + strand, within OLJFJH_03200at 596.973 kb on - strand, within OLJFJH_03200at 596.973 kb on - strand, within OLJFJH_03200at 596.973 kb on - strand, within OLJFJH_03200at 596.975 kb on + strand, within OLJFJH_03200at 596.975 kb on + strand, within OLJFJH_03200at 596.975 kb on + strand, within OLJFJH_03200at 596.975 kb on + strand, within OLJFJH_03200at 596.976 kb on - strand, within OLJFJH_03200at 596.976 kb on - strand, within OLJFJH_03200at 596.976 kb on - strand, within OLJFJH_03200at 596.984 kb on - strand, within OLJFJH_03200at 597.038 kb on + strand, within OLJFJH_03200at 597.083 kb on + strand, within OLJFJH_03200at 597.159 kb on - strand, within OLJFJH_03200at 597.167 kb on + strand, within OLJFJH_03200at 597.178 kb on - strand, within OLJFJH_03200at 597.178 kb on - strand, within OLJFJH_03200at 597.316 kb on - strand, within OLJFJH_03200at 597.356 kb on + strand, within OLJFJH_03200at 597.376 kb on - strand, within OLJFJH_03200at 597.384 kb on + strand, within OLJFJH_03200at 597.470 kb on + strand, within OLJFJH_03200at 597.471 kb on - strand, within OLJFJH_03200at 597.494 kb on - strand, within OLJFJH_03200at 597.496 kb on + strand, within OLJFJH_03200at 597.563 kb on - strand, within OLJFJH_03200at 597.585 kb on - strand, within OLJFJH_03200at 597.609 kb on + strand, within OLJFJH_03200at 597.612 kb on + strand, within OLJFJH_03200at 597.613 kb on - strand, within OLJFJH_03200at 597.665 kb on + strand, within OLJFJH_03200at 597.666 kb on - strand, within OLJFJH_03200at 597.666 kb on - strand, within OLJFJH_03200at 597.666 kb on - strand, within OLJFJH_03200at 597.725 kb on + strand, within OLJFJH_03200at 597.725 kb on + strand, within OLJFJH_03200at 597.726 kb on - strand, within OLJFJH_03200at 597.869 kb on + strand, within OLJFJH_03200at 597.870 kb on - strand, within OLJFJH_03200at 597.957 kb on - strand, within OLJFJH_03200at 598.026 kb on - strand, within OLJFJH_03200at 598.048 kb on - strand, within OLJFJH_03200at 598.145 kb on + strand, within OLJFJH_03200at 598.333 kb on - strand, within OLJFJH_03200at 598.336 kb on - strand, within OLJFJH_03200at 598.353 kb on - strand, within OLJFJH_03200at 598.353 kb on - strand, within OLJFJH_03200at 598.539 kb on + strandat 598.540 kb on - strandat 598.540 kb on - strandat 598.650 kb on + strandat 598.650 kb on + strandat 598.651 kb on - strandat 598.651 kb on - strandat 598.651 kb on - strandat 598.654 kb on - strandat 598.660 kb on - strandat 598.737 kb on + strandat 598.754 kb on + strandat 598.754 kb on + strandat 598.776 kb on + strandat 598.776 kb on + strandat 598.777 kb on - strandat 598.783 kb on - strandat 598.785 kb on + strandat 598.785 kb on + strandat 598.786 kb on - strandat 598.796 kb on - strandat 598.862 kb on + strandat 598.863 kb on - strandat 598.957 kb on - strandat 598.987 kb on + strandat 598.987 kb on + strandat 598.987 kb on + strandat 598.987 kb on + strandat 598.987 kb on + strandat 598.987 kb on + strandat 598.987 kb on + strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.988 kb on - strandat 598.992 kb on - strandat 599.003 kb on - strandat 599.048 kb on - strandat 599.073 kb on + strandat 599.073 kb on + strandat 599.082 kb on + strandat 599.083 kb on - strandat 599.094 kb on + strandat 599.095 kb on - strandat 599.190 kb on + strand, within OLJFJH_03205at 599.220 kb on + strand, within OLJFJH_03205at 599.220 kb on + strand, within OLJFJH_03205at 599.221 kb on - strand, within OLJFJH_03205at 599.221 kb on - strand, within OLJFJH_03205at 599.224 kb on + strand, within OLJFJH_03205at 599.225 kb on - strand, within OLJFJH_03205at 599.225 kb on - strand, within OLJFJH_03205at 599.225 kb on - strand, within OLJFJH_03205at 599.412 kb on + strand, within OLJFJH_03205at 599.413 kb on - strand, within OLJFJH_03205at 599.618 kb on + strandat 599.618 kb on + strandat 599.618 kb on + strandat 599.620 kb on + strandat 599.620 kb on + strandat 599.620 kb on + strandat 599.620 kb on + strandat 599.620 kb on + strandat 599.621 kb on - strandat 599.621 kb on - strandat 599.622 kb on + strandat 599.623 kb on - strandat 599.623 kb on - strandat 599.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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595,509 + OLJFJH_03195 0.61 -0.3
595,509 + OLJFJH_03195 0.61 -0.9
595,548 - OLJFJH_03195 0.63 -0.5
595,569 + OLJFJH_03195 0.64 +1.6
595,569 + OLJFJH_03195 0.64 +0.6
595,569 + OLJFJH_03195 0.64 -0.8
595,569 + OLJFJH_03195 0.64 +0.1
595,569 + OLJFJH_03195 0.64 +1.4
595,569 + OLJFJH_03195 0.64 -1.3
595,569 + OLJFJH_03195 0.64 +1.1
595,569 + OLJFJH_03195 0.64 +0.6
595,569 + OLJFJH_03195 0.64 -0.2
595,569 + OLJFJH_03195 0.64 +0.1
595,569 + OLJFJH_03195 0.64 -0.6
595,569 + OLJFJH_03195 0.64 +0.4
595,570 - OLJFJH_03195 0.64 +0.2
595,570 - OLJFJH_03195 0.64 +1.6
595,570 - OLJFJH_03195 0.64 -0.6
595,570 - OLJFJH_03195 0.64 +0.6
595,570 - OLJFJH_03195 0.64 +1.3
595,570 - OLJFJH_03195 0.64 +1.4
595,570 - OLJFJH_03195 0.64 +2.3
595,570 - OLJFJH_03195 0.64 -0.6
595,571 + OLJFJH_03195 0.64 +0.2
595,571 + OLJFJH_03195 0.64 -0.3
595,571 + OLJFJH_03195 0.64 +0.3
595,572 - OLJFJH_03195 0.64 +0.0
595,572 - OLJFJH_03195 0.64 +0.5
595,572 - OLJFJH_03195 0.64 +2.9
595,725 + OLJFJH_03195 0.70 +0.1
595,758 - OLJFJH_03195 0.72 +1.4
595,896 + OLJFJH_03195 0.77 +1.0
595,935 + OLJFJH_03195 0.79 +0.1
595,936 - OLJFJH_03195 0.79 -0.1
595,936 - OLJFJH_03195 0.79 +0.8
595,956 - OLJFJH_03195 0.80 +0.1
596,014 - OLJFJH_03195 0.82 +0.2
596,015 + OLJFJH_03195 0.83 +2.5
596,239 - -0.3
596,284 + +3.8
596,285 + +0.9
596,285 + +0.5
596,285 + +1.7
596,538 + -1.2
596,539 - -1.7
596,574 - -0.1
596,588 + -0.9
596,617 + -1.2
596,618 - +0.1
596,687 - -1.5
596,687 - -0.7
596,745 - OLJFJH_03200 0.11 -1.0
596,862 + OLJFJH_03200 0.17 +0.6
596,862 + OLJFJH_03200 0.17 -1.3
596,863 - OLJFJH_03200 0.17 -0.6
596,864 + OLJFJH_03200 0.17 -1.2
596,865 - OLJFJH_03200 0.17 -0.0
596,869 + OLJFJH_03200 0.17 -0.2
596,869 + OLJFJH_03200 0.17 -1.0
596,869 + OLJFJH_03200 0.17 +0.8
596,889 + OLJFJH_03200 0.18 -0.9
596,890 - OLJFJH_03200 0.18 +0.1
596,972 + OLJFJH_03200 0.22 +0.0
596,973 - OLJFJH_03200 0.22 -0.9
596,973 - OLJFJH_03200 0.22 +0.4
596,973 - OLJFJH_03200 0.22 -1.0
596,975 + OLJFJH_03200 0.22 -0.5
596,975 + OLJFJH_03200 0.22 -1.7
596,975 + OLJFJH_03200 0.22 -0.4
596,975 + OLJFJH_03200 0.22 -0.7
596,976 - OLJFJH_03200 0.22 +0.2
596,976 - OLJFJH_03200 0.22 -0.2
596,976 - OLJFJH_03200 0.22 -1.8
596,984 - OLJFJH_03200 0.23 -0.6
597,038 + OLJFJH_03200 0.25 +1.6
597,083 + OLJFJH_03200 0.27 -0.4
597,159 - OLJFJH_03200 0.31 -0.9
597,167 + OLJFJH_03200 0.31 +0.7
597,178 - OLJFJH_03200 0.32 -0.4
597,178 - OLJFJH_03200 0.32 +0.1
597,316 - OLJFJH_03200 0.38 -0.8
597,356 + OLJFJH_03200 0.40 +0.1
597,376 - OLJFJH_03200 0.41 -2.9
597,384 + OLJFJH_03200 0.41 -0.9
597,470 + OLJFJH_03200 0.46 +0.4
597,471 - OLJFJH_03200 0.46 -0.7
597,494 - OLJFJH_03200 0.47 +0.6
597,496 + OLJFJH_03200 0.47 +0.4
597,563 - OLJFJH_03200 0.50 -0.8
597,585 - OLJFJH_03200 0.51 -0.1
597,609 + OLJFJH_03200 0.52 -0.2
597,612 + OLJFJH_03200 0.52 +0.4
597,613 - OLJFJH_03200 0.52 -0.2
597,665 + OLJFJH_03200 0.55 -0.1
597,666 - OLJFJH_03200 0.55 -1.9
597,666 - OLJFJH_03200 0.55 -1.5
597,666 - OLJFJH_03200 0.55 -1.4
597,725 + OLJFJH_03200 0.58 -0.9
597,725 + OLJFJH_03200 0.58 -1.7
597,726 - OLJFJH_03200 0.58 -2.0
597,869 + OLJFJH_03200 0.64 -1.9
597,870 - OLJFJH_03200 0.64 -1.3
597,957 - OLJFJH_03200 0.69 +0.6
598,026 - OLJFJH_03200 0.72 +0.1
598,048 - OLJFJH_03200 0.73 -1.0
598,145 + OLJFJH_03200 0.77 -0.8
598,333 - OLJFJH_03200 0.86 +1.2
598,336 - OLJFJH_03200 0.86 -1.2
598,353 - OLJFJH_03200 0.87 -0.3
598,353 - OLJFJH_03200 0.87 -0.4
598,539 + -1.5
598,540 - -0.3
598,540 - -1.7
598,650 + -1.4
598,650 + -0.0
598,651 - -0.1
598,651 - +0.7
598,651 - -0.6
598,654 - +0.3
598,660 - +0.7
598,737 + -0.1
598,754 + -0.3
598,754 + +1.5
598,776 + -1.2
598,776 + +0.4
598,777 - +1.9
598,783 - +0.6
598,785 + -0.6
598,785 + -0.6
598,786 - -1.0
598,796 - -0.2
598,862 + -0.6
598,863 - -1.2
598,957 - +1.0
598,987 + +0.2
598,987 + +2.7
598,987 + +0.1
598,987 + +0.4
598,987 + +1.3
598,987 + +0.5
598,987 + +3.5
598,988 - +0.3
598,988 - -0.2
598,988 - +1.0
598,988 - -0.1
598,988 - -1.2
598,988 - +0.0
598,988 - -0.2
598,988 - +0.2
598,988 - -1.2
598,988 - -0.7
598,992 - +2.4
599,003 - -0.4
599,048 - +1.3
599,073 + +0.5
599,073 + -1.0
599,082 + -0.2
599,083 - +0.1
599,094 + +0.6
599,095 - -0.8
599,190 + OLJFJH_03205 0.27 +0.6
599,220 + OLJFJH_03205 0.35 +0.5
599,220 + OLJFJH_03205 0.35 -0.8
599,221 - OLJFJH_03205 0.35 +1.4
599,221 - OLJFJH_03205 0.35 -0.6
599,224 + OLJFJH_03205 0.36 +4.6
599,225 - OLJFJH_03205 0.36 -0.2
599,225 - OLJFJH_03205 0.36 +0.0
599,225 - OLJFJH_03205 0.36 +0.5
599,412 + OLJFJH_03205 0.86 +1.3
599,413 - OLJFJH_03205 0.86 -0.7
599,618 + -0.4
599,618 + -0.2
599,618 + -1.4
599,620 + -0.2
599,620 + +2.6
599,620 + -0.7
599,620 + -0.3
599,620 + -0.8
599,621 - -0.4
599,621 - -2.3
599,622 + -1.0
599,623 - +0.1
599,623 - -1.5
599,623 - -0.5

Or see this region's nucleotide sequence