Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01365 and OLJFJH_01370 overlap by 8 nucleotides OLJFJH_01370 and OLJFJH_01375 overlap by 4 nucleotides OLJFJH_01375 and OLJFJH_01380 are separated by 13 nucleotides OLJFJH_01380 and OLJFJH_01385 are separated by 41 nucleotides
OLJFJH_01365: OLJFJH_01365 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 216,063 to 217,055
_01365
OLJFJH_01370: OLJFJH_01370 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 217,048 to 217,875
_01370
OLJFJH_01375: OLJFJH_01375 - Co2+/Mg2+ efflux protein ApaG, at 217,872 to 218,249
_01375
OLJFJH_01380: OLJFJH_01380 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 218,263 to 219,087
_01380
OLJFJH_01385: OLJFJH_01385 - type 3 dihydrofolate reductase, at 219,129 to 219,611
_01385
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.880 kb on + strand, within OLJFJH_01365 at 217.037 kb on + strand at 217.037 kb on + strand at 217.120 kb on - strand at 217.228 kb on - strand, within OLJFJH_01370 at 217.428 kb on + strand, within OLJFJH_01370 at 217.428 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.432 kb on + strand, within OLJFJH_01370 at 217.452 kb on + strand, within OLJFJH_01370 at 217.546 kb on + strand, within OLJFJH_01370 at 217.705 kb on - strand, within OLJFJH_01370 at 217.830 kb on + strand at 217.914 kb on + strand, within OLJFJH_01375 at 217.915 kb on - strand, within OLJFJH_01375 at 217.915 kb on - strand, within OLJFJH_01375 at 217.951 kb on - strand, within OLJFJH_01375 at 217.962 kb on + strand, within OLJFJH_01375 at 217.963 kb on - strand, within OLJFJH_01375 at 217.963 kb on - strand, within OLJFJH_01375 at 217.992 kb on - strand, within OLJFJH_01375 at 218.091 kb on - strand, within OLJFJH_01375 at 218.091 kb on - strand, within OLJFJH_01375 at 218.116 kb on - strand, within OLJFJH_01375 at 218.272 kb on + strand at 218.273 kb on - strand at 218.276 kb on + strand at 218.277 kb on - strand at 218.560 kb on - strand, within OLJFJH_01380 at 218.585 kb on + strand, within OLJFJH_01380 at 218.585 kb on + strand, within OLJFJH_01380 at 218.701 kb on - strand, within OLJFJH_01380 at 218.719 kb on - strand, within OLJFJH_01380 at 218.736 kb on + strand, within OLJFJH_01380 at 218.816 kb on - strand, within OLJFJH_01380 at 218.923 kb on + strand, within OLJFJH_01380 at 218.924 kb on - strand, within OLJFJH_01380 at 218.924 kb on - strand, within OLJFJH_01380 at 219.085 kb on + strand at 219.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9 remove 216,880 + OLJFJH_01365 0.82 -0.5 217,037 + -3.2 217,037 + +0.2 217,120 - +0.2 217,228 - OLJFJH_01370 0.22 -0.1 217,428 + OLJFJH_01370 0.46 -0.3 217,428 + OLJFJH_01370 0.46 -1.3 217,432 + OLJFJH_01370 0.46 -0.0 217,432 + OLJFJH_01370 0.46 -2.5 217,432 + OLJFJH_01370 0.46 -0.5 217,452 + OLJFJH_01370 0.49 -0.1 217,546 + OLJFJH_01370 0.60 -1.6 217,705 - OLJFJH_01370 0.79 +0.9 217,830 + -0.3 217,914 + OLJFJH_01375 0.11 -1.2 217,915 - OLJFJH_01375 0.11 +0.9 217,915 - OLJFJH_01375 0.11 -1.4 217,951 - OLJFJH_01375 0.21 -1.3 217,962 + OLJFJH_01375 0.24 -0.5 217,963 - OLJFJH_01375 0.24 -0.3 217,963 - OLJFJH_01375 0.24 -0.7 217,992 - OLJFJH_01375 0.32 -0.7 218,091 - OLJFJH_01375 0.58 -0.3 218,091 - OLJFJH_01375 0.58 +0.4 218,116 - OLJFJH_01375 0.65 -2.7 218,272 + -0.1 218,273 - -0.3 218,276 + -0.4 218,277 - +0.4 218,560 - OLJFJH_01380 0.36 -1.4 218,585 + OLJFJH_01380 0.39 +0.6 218,585 + OLJFJH_01380 0.39 -0.6 218,701 - OLJFJH_01380 0.53 -0.2 218,719 - OLJFJH_01380 0.55 -0.2 218,736 + OLJFJH_01380 0.57 +2.1 218,816 - OLJFJH_01380 0.67 -1.2 218,923 + OLJFJH_01380 0.80 -1.5 218,924 - OLJFJH_01380 0.80 -1.1 218,924 - OLJFJH_01380 0.80 -1.6 219,085 + -0.3 219,085 + -0.2
Or see this region's nucleotide sequence