Strain Fitness in Erwinia amylovora T8 around OLJFJH_00775

Experiment: Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00770 and OLJFJH_00775 are separated by 133 nucleotidesOLJFJH_00775 and OLJFJH_00780 overlap by 4 nucleotidesOLJFJH_00780 and OLJFJH_00785 are separated by 77 nucleotides OLJFJH_00770: OLJFJH_00770 - tRNA glutamyl-Q(34) synthetase GluQRS, at 73,951 to 74,859 _00770 OLJFJH_00775: OLJFJH_00775 - polynucleotide adenylyltransferase PcnB, at 74,993 to 76,342 _00775 OLJFJH_00780: OLJFJH_00780 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 76,339 to 76,821 _00780 OLJFJH_00785: OLJFJH_00785 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 76,899 to 77,693 _00785 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 74.035 kb on + strandat 74.036 kb on - strandat 74.036 kb on - strandat 74.036 kb on - strandat 74.085 kb on + strand, within OLJFJH_00770at 74.086 kb on - strand, within OLJFJH_00770at 74.086 kb on - strand, within OLJFJH_00770at 74.201 kb on - strand, within OLJFJH_00770at 74.242 kb on + strand, within OLJFJH_00770at 74.243 kb on - strand, within OLJFJH_00770at 74.250 kb on + strand, within OLJFJH_00770at 74.290 kb on + strand, within OLJFJH_00770at 74.352 kb on - strand, within OLJFJH_00770at 74.352 kb on - strand, within OLJFJH_00770at 74.355 kb on + strand, within OLJFJH_00770at 74.355 kb on + strand, within OLJFJH_00770at 74.355 kb on + strand, within OLJFJH_00770at 74.364 kb on - strand, within OLJFJH_00770at 74.462 kb on - strand, within OLJFJH_00770at 74.594 kb on + strand, within OLJFJH_00770at 74.594 kb on + strand, within OLJFJH_00770at 74.595 kb on - strand, within OLJFJH_00770at 74.628 kb on + strand, within OLJFJH_00770at 74.629 kb on - strand, within OLJFJH_00770at 74.759 kb on + strand, within OLJFJH_00770at 74.760 kb on - strand, within OLJFJH_00770at 74.790 kb on + strandat 74.790 kb on + strandat 74.793 kb on + strandat 74.793 kb on + strandat 74.794 kb on - strandat 74.794 kb on - strandat 74.823 kb on + strandat 74.823 kb on + strandat 74.824 kb on - strandat 74.824 kb on - strandat 74.863 kb on - strandat 74.888 kb on + strandat 75.196 kb on + strand, within OLJFJH_00775at 75.431 kb on + strand, within OLJFJH_00775at 75.431 kb on + strand, within OLJFJH_00775at 75.431 kb on + strand, within OLJFJH_00775at 75.709 kb on + strand, within OLJFJH_00775at 75.709 kb on + strand, within OLJFJH_00775at 75.709 kb on + strand, within OLJFJH_00775at 75.709 kb on + strand, within OLJFJH_00775at 75.709 kb on + strand, within OLJFJH_00775at 75.718 kb on + strand, within OLJFJH_00775at 75.731 kb on + strand, within OLJFJH_00775at 75.793 kb on + strand, within OLJFJH_00775at 75.793 kb on + strand, within OLJFJH_00775at 75.947 kb on + strand, within OLJFJH_00775at 75.947 kb on + strand, within OLJFJH_00775at 75.950 kb on + strand, within OLJFJH_00775at 76.021 kb on + strand, within OLJFJH_00775at 76.021 kb on + strand, within OLJFJH_00775at 76.111 kb on + strand, within OLJFJH_00775at 76.111 kb on + strand, within OLJFJH_00775at 76.800 kb on + strandat 76.819 kb on + strandat 76.862 kb on + strandat 76.896 kb on - strandat 76.949 kb on + strandat 76.950 kb on - strandat 77.051 kb on - strand, within OLJFJH_00785at 77.097 kb on + strand, within OLJFJH_00785at 77.098 kb on - strand, within OLJFJH_00785at 77.160 kb on - strand, within OLJFJH_00785at 77.160 kb on - strand, within OLJFJH_00785at 77.167 kb on - strand, within OLJFJH_00785at 77.167 kb on - strand, within OLJFJH_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:17;Samp:6-9
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74,035 + +3.4
74,036 - +0.2
74,036 - +0.2
74,036 - -1.9
74,085 + OLJFJH_00770 0.15 +0.7
74,086 - OLJFJH_00770 0.15 +0.1
74,086 - OLJFJH_00770 0.15 -0.9
74,201 - OLJFJH_00770 0.28 -0.0
74,242 + OLJFJH_00770 0.32 +0.3
74,243 - OLJFJH_00770 0.32 +0.6
74,250 + OLJFJH_00770 0.33 -1.8
74,290 + OLJFJH_00770 0.37 -1.0
74,352 - OLJFJH_00770 0.44 -1.1
74,352 - OLJFJH_00770 0.44 +0.0
74,355 + OLJFJH_00770 0.44 -1.0
74,355 + OLJFJH_00770 0.44 -0.7
74,355 + OLJFJH_00770 0.44 +3.3
74,364 - OLJFJH_00770 0.45 -1.2
74,462 - OLJFJH_00770 0.56 -0.4
74,594 + OLJFJH_00770 0.71 +0.5
74,594 + OLJFJH_00770 0.71 +1.2
74,595 - OLJFJH_00770 0.71 +2.7
74,628 + OLJFJH_00770 0.74 -1.4
74,629 - OLJFJH_00770 0.75 -0.2
74,759 + OLJFJH_00770 0.89 -0.8
74,760 - OLJFJH_00770 0.89 -0.3
74,790 + +0.4
74,790 + +1.0
74,793 + -1.2
74,793 + +0.7
74,794 - -0.6
74,794 - +0.1
74,823 + +0.3
74,823 + -0.0
74,824 - +2.5
74,824 - -0.0
74,863 - -0.3
74,888 + +0.7
75,196 + OLJFJH_00775 0.15 +0.3
75,431 + OLJFJH_00775 0.32 -2.0
75,431 + OLJFJH_00775 0.32 +0.5
75,431 + OLJFJH_00775 0.32 -1.0
75,709 + OLJFJH_00775 0.53 -0.1
75,709 + OLJFJH_00775 0.53 -1.3
75,709 + OLJFJH_00775 0.53 -2.2
75,709 + OLJFJH_00775 0.53 -0.8
75,709 + OLJFJH_00775 0.53 +0.9
75,718 + OLJFJH_00775 0.54 -1.5
75,731 + OLJFJH_00775 0.55 -0.7
75,793 + OLJFJH_00775 0.59 +0.7
75,793 + OLJFJH_00775 0.59 -1.5
75,947 + OLJFJH_00775 0.71 -0.9
75,947 + OLJFJH_00775 0.71 -0.9
75,950 + OLJFJH_00775 0.71 -3.7
76,021 + OLJFJH_00775 0.76 -1.6
76,021 + OLJFJH_00775 0.76 -1.3
76,111 + OLJFJH_00775 0.83 -1.7
76,111 + OLJFJH_00775 0.83 -1.7
76,800 + -1.5
76,819 + +1.1
76,862 + -1.1
76,896 - -0.1
76,949 + -0.9
76,950 - +0.5
77,051 - OLJFJH_00785 0.19 -1.1
77,097 + OLJFJH_00785 0.25 +0.6
77,098 - OLJFJH_00785 0.25 -0.1
77,160 - OLJFJH_00785 0.33 -0.1
77,160 - OLJFJH_00785 0.33 +1.3
77,167 - OLJFJH_00785 0.34 +0.5
77,167 - OLJFJH_00785 0.34 -0.7

Or see this region's nucleotide sequence