Strain Fitness in Erwinia amylovora T8 around OLJFJH_17510

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17495 and OLJFJH_17500 are separated by 10 nucleotidesOLJFJH_17500 and OLJFJH_17505 overlap by 1 nucleotidesOLJFJH_17505 and OLJFJH_17510 are separated by 188 nucleotidesOLJFJH_17510 and OLJFJH_17515 are separated by 43 nucleotidesOLJFJH_17515 and OLJFJH_17520 are separated by 103 nucleotidesOLJFJH_17520 and OLJFJH_17525 are separated by 176 nucleotides OLJFJH_17495: OLJFJH_17495 - tape measure protein, at 3,691,528 to 3,692,727 _17495 OLJFJH_17500: OLJFJH_17500 - hypothetical protein, at 3,692,738 to 3,693,064 _17500 OLJFJH_17505: OLJFJH_17505 - hypothetical protein, at 3,693,064 to 3,693,240 _17505 OLJFJH_17510: OLJFJH_17510 - hypothetical protein, at 3,693,429 to 3,694,568 _17510 OLJFJH_17515: OLJFJH_17515 - hypothetical protein, at 3,694,612 to 3,694,968 _17515 OLJFJH_17520: OLJFJH_17520 - PerC family transcriptional regulator, at 3,695,072 to 3,695,341 _17520 OLJFJH_17525: OLJFJH_17525 - DNA primase, at 3,695,518 to 3,698,334 _17525 Position (kb) 3693 3694 3695Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3692.530 kb on + strand, within OLJFJH_17495at 3692.530 kb on + strand, within OLJFJH_17495at 3692.632 kb on + strandat 3692.632 kb on + strandat 3692.632 kb on + strandat 3692.632 kb on + strandat 3692.632 kb on + strandat 3692.633 kb on - strandat 3692.633 kb on - strandat 3692.633 kb on - strandat 3692.633 kb on - strandat 3692.633 kb on - strandat 3692.662 kb on + strandat 3692.662 kb on + strandat 3692.663 kb on - strandat 3692.682 kb on + strandat 3692.682 kb on + strandat 3692.682 kb on + strandat 3692.686 kb on + strandat 3692.686 kb on + strandat 3692.687 kb on - strandat 3692.687 kb on - strandat 3692.687 kb on - strandat 3692.789 kb on - strand, within OLJFJH_17500at 3692.847 kb on - strand, within OLJFJH_17500at 3692.847 kb on - strand, within OLJFJH_17500at 3692.847 kb on - strand, within OLJFJH_17500at 3692.866 kb on - strand, within OLJFJH_17500at 3692.910 kb on + strand, within OLJFJH_17500at 3692.910 kb on + strand, within OLJFJH_17500at 3692.911 kb on - strand, within OLJFJH_17500at 3692.911 kb on - strand, within OLJFJH_17500at 3692.911 kb on - strand, within OLJFJH_17500at 3692.911 kb on - strand, within OLJFJH_17500at 3692.914 kb on + strand, within OLJFJH_17500at 3692.914 kb on + strand, within OLJFJH_17500at 3692.914 kb on + strand, within OLJFJH_17500at 3692.915 kb on - strand, within OLJFJH_17500at 3692.999 kb on - strand, within OLJFJH_17500at 3693.142 kb on + strand, within OLJFJH_17505at 3693.143 kb on - strand, within OLJFJH_17505at 3693.267 kb on - strandat 3693.323 kb on + strandat 3693.345 kb on - strandat 3693.405 kb on - strandat 3693.405 kb on - strandat 3693.407 kb on - strandat 3693.408 kb on + strandat 3693.408 kb on + strandat 3693.430 kb on + strandat 3693.431 kb on - strandat 3693.477 kb on + strandat 3693.477 kb on + strandat 3693.477 kb on + strandat 3693.477 kb on + strandat 3693.477 kb on + strandat 3693.477 kb on + strandat 3693.478 kb on - strandat 3693.478 kb on - strandat 3693.478 kb on - strandat 3693.478 kb on - strandat 3693.508 kb on + strandat 3693.509 kb on - strandat 3693.729 kb on + strand, within OLJFJH_17510at 3693.733 kb on + strand, within OLJFJH_17510at 3693.733 kb on + strand, within OLJFJH_17510at 3693.734 kb on - strand, within OLJFJH_17510at 3693.784 kb on - strand, within OLJFJH_17510at 3693.823 kb on - strand, within OLJFJH_17510at 3693.924 kb on - strand, within OLJFJH_17510at 3693.945 kb on + strand, within OLJFJH_17510at 3694.071 kb on - strand, within OLJFJH_17510at 3694.088 kb on - strand, within OLJFJH_17510at 3694.182 kb on - strand, within OLJFJH_17510at 3694.182 kb on - strand, within OLJFJH_17510at 3694.182 kb on - strand, within OLJFJH_17510at 3694.339 kb on - strand, within OLJFJH_17510at 3694.535 kb on + strandat 3694.536 kb on - strandat 3694.712 kb on + strand, within OLJFJH_17515at 3694.746 kb on + strand, within OLJFJH_17515at 3694.747 kb on - strand, within OLJFJH_17515at 3694.758 kb on + strand, within OLJFJH_17515at 3694.917 kb on + strand, within OLJFJH_17515at 3694.918 kb on - strand, within OLJFJH_17515at 3694.931 kb on - strand, within OLJFJH_17515at 3694.974 kb on - strandat 3695.016 kb on - strandat 3695.115 kb on - strand, within OLJFJH_17520at 3695.135 kb on - strand, within OLJFJH_17520at 3695.135 kb on - strand, within OLJFJH_17520at 3695.135 kb on - strand, within OLJFJH_17520at 3695.171 kb on + strand, within OLJFJH_17520at 3695.172 kb on - strand, within OLJFJH_17520at 3695.172 kb on - strand, within OLJFJH_17520at 3695.337 kb on - strandat 3695.337 kb on - strandat 3695.357 kb on + strandat 3695.497 kb on - strandat 3695.500 kb on + strandat 3695.500 kb on + strandat 3695.501 kb on - strandat 3695.548 kb on + strandat 3695.549 kb on - strandat 3695.552 kb on + strandat 3695.552 kb on + strandat 3695.552 kb on + strandat 3695.553 kb on - strandat 3695.553 kb on - strandat 3695.564 kb on + strandat 3695.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-6
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3,692,530 + OLJFJH_17495 0.83 -0.6
3,692,530 + OLJFJH_17495 0.83 -0.6
3,692,632 + -1.0
3,692,632 + +1.4
3,692,632 + +0.6
3,692,632 + -0.3
3,692,632 + -0.0
3,692,633 - -0.9
3,692,633 - +3.3
3,692,633 - +0.6
3,692,633 - -0.6
3,692,633 - +0.2
3,692,662 + +0.4
3,692,662 + -0.4
3,692,663 - +0.8
3,692,682 + -0.1
3,692,682 + +3.3
3,692,682 + -0.3
3,692,686 + +0.7
3,692,686 + -0.3
3,692,687 - +0.5
3,692,687 - -0.8
3,692,687 - +0.1
3,692,789 - OLJFJH_17500 0.16 +0.4
3,692,847 - OLJFJH_17500 0.33 +0.1
3,692,847 - OLJFJH_17500 0.33 +0.3
3,692,847 - OLJFJH_17500 0.33 +1.2
3,692,866 - OLJFJH_17500 0.39 +2.4
3,692,910 + OLJFJH_17500 0.53 +1.2
3,692,910 + OLJFJH_17500 0.53 -2.4
3,692,911 - OLJFJH_17500 0.53 +0.5
3,692,911 - OLJFJH_17500 0.53 +0.4
3,692,911 - OLJFJH_17500 0.53 -0.0
3,692,911 - OLJFJH_17500 0.53 -0.2
3,692,914 + OLJFJH_17500 0.54 +0.1
3,692,914 + OLJFJH_17500 0.54 +2.6
3,692,914 + OLJFJH_17500 0.54 +0.8
3,692,915 - OLJFJH_17500 0.54 -0.3
3,692,999 - OLJFJH_17500 0.80 -0.9
3,693,142 + OLJFJH_17505 0.44 -0.8
3,693,143 - OLJFJH_17505 0.45 +0.1
3,693,267 - -0.7
3,693,323 + -0.0
3,693,345 - -1.8
3,693,405 - -1.2
3,693,405 - +0.1
3,693,407 - +2.5
3,693,408 + +0.1
3,693,408 + +0.3
3,693,430 + -0.4
3,693,431 - -1.1
3,693,477 + -0.6
3,693,477 + -1.1
3,693,477 + +0.7
3,693,477 + +0.4
3,693,477 + +0.3
3,693,477 + -0.7
3,693,478 - -1.2
3,693,478 - +0.3
3,693,478 - -0.7
3,693,478 - -1.6
3,693,508 + +0.1
3,693,509 - -0.6
3,693,729 + OLJFJH_17510 0.26 +2.2
3,693,733 + OLJFJH_17510 0.27 -0.1
3,693,733 + OLJFJH_17510 0.27 +1.0
3,693,734 - OLJFJH_17510 0.27 +0.1
3,693,784 - OLJFJH_17510 0.31 +1.6
3,693,823 - OLJFJH_17510 0.35 -0.5
3,693,924 - OLJFJH_17510 0.43 -1.0
3,693,945 + OLJFJH_17510 0.45 +0.5
3,694,071 - OLJFJH_17510 0.56 +0.8
3,694,088 - OLJFJH_17510 0.58 +0.0
3,694,182 - OLJFJH_17510 0.66 +1.2
3,694,182 - OLJFJH_17510 0.66 +0.4
3,694,182 - OLJFJH_17510 0.66 -0.1
3,694,339 - OLJFJH_17510 0.80 +0.5
3,694,535 + -0.3
3,694,536 - +3.7
3,694,712 + OLJFJH_17515 0.28 -1.7
3,694,746 + OLJFJH_17515 0.38 +0.1
3,694,747 - OLJFJH_17515 0.38 -0.1
3,694,758 + OLJFJH_17515 0.41 -0.2
3,694,917 + OLJFJH_17515 0.85 +0.1
3,694,918 - OLJFJH_17515 0.86 -0.4
3,694,931 - OLJFJH_17515 0.89 -0.0
3,694,974 - +0.8
3,695,016 - +1.5
3,695,115 - OLJFJH_17520 0.16 +0.8
3,695,135 - OLJFJH_17520 0.23 +1.5
3,695,135 - OLJFJH_17520 0.23 +0.1
3,695,135 - OLJFJH_17520 0.23 -0.6
3,695,171 + OLJFJH_17520 0.37 +0.0
3,695,172 - OLJFJH_17520 0.37 +0.1
3,695,172 - OLJFJH_17520 0.37 +0.5
3,695,337 - +0.0
3,695,337 - +0.8
3,695,357 + +1.8
3,695,497 - -0.2
3,695,500 + -0.3
3,695,500 + -0.5
3,695,501 - +0.4
3,695,548 + +1.8
3,695,549 - +0.2
3,695,552 + +1.7
3,695,552 + +0.2
3,695,552 + -0.1
3,695,553 - +0.4
3,695,553 - -0.2
3,695,564 + -0.3
3,695,565 - -0.3

Or see this region's nucleotide sequence