Strain Fitness in Erwinia amylovora T8 around OLJFJH_17955

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17950 and OLJFJH_17955 are separated by 221 nucleotidesOLJFJH_17955 and OLJFJH_17960 are separated by 208 nucleotides OLJFJH_17950: OLJFJH_17950 - peptidylprolyl isomerase, at 3,767,866 to 3,769,737 _17950 OLJFJH_17955: OLJFJH_17955 - DNA-binding protein HU-beta, at 3,769,959 to 3,770,231 _17955 OLJFJH_17960: OLJFJH_17960 - endopeptidase La, at 3,770,440 to 3,772,794 _17960 Position (kb) 3769 3770 3771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3769.034 kb on + strand, within OLJFJH_17950at 3769.035 kb on - strand, within OLJFJH_17950at 3769.035 kb on - strand, within OLJFJH_17950at 3769.086 kb on - strand, within OLJFJH_17950at 3769.088 kb on + strand, within OLJFJH_17950at 3769.088 kb on + strand, within OLJFJH_17950at 3769.088 kb on + strand, within OLJFJH_17950at 3769.211 kb on - strand, within OLJFJH_17950at 3769.243 kb on - strand, within OLJFJH_17950at 3769.491 kb on - strand, within OLJFJH_17950at 3769.689 kb on + strandat 3769.770 kb on - strandat 3769.872 kb on - strandat 3769.872 kb on - strandat 3769.887 kb on - strandat 3769.891 kb on + strandat 3769.891 kb on + strandat 3769.891 kb on + strandat 3769.891 kb on + strandat 3769.892 kb on - strandat 3769.892 kb on - strandat 3769.892 kb on - strandat 3770.024 kb on + strand, within OLJFJH_17955at 3770.025 kb on - strand, within OLJFJH_17955at 3770.025 kb on - strand, within OLJFJH_17955at 3770.186 kb on + strand, within OLJFJH_17955at 3770.225 kb on + strandat 3770.416 kb on + strandat 3770.468 kb on + strandat 3770.468 kb on + strandat 3770.497 kb on + strandat 3770.497 kb on + strandat 3770.498 kb on - strandat 3770.498 kb on - strandat 3770.508 kb on + strandat 3770.692 kb on + strand, within OLJFJH_17960at 3770.692 kb on + strand, within OLJFJH_17960at 3770.820 kb on - strand, within OLJFJH_17960at 3770.919 kb on - strand, within OLJFJH_17960at 3771.045 kb on - strand, within OLJFJH_17960at 3771.168 kb on + strand, within OLJFJH_17960at 3771.191 kb on + strand, within OLJFJH_17960at 3771.191 kb on + strand, within OLJFJH_17960at 3771.191 kb on + strand, within OLJFJH_17960at 3771.191 kb on + strand, within OLJFJH_17960at 3771.191 kb on + strand, within OLJFJH_17960at 3771.192 kb on - strand, within OLJFJH_17960at 3771.205 kb on - strand, within OLJFJH_17960

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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3,769,034 + OLJFJH_17950 0.62 -1.3
3,769,035 - OLJFJH_17950 0.62 -0.5
3,769,035 - OLJFJH_17950 0.62 +0.0
3,769,086 - OLJFJH_17950 0.65 -0.9
3,769,088 + OLJFJH_17950 0.65 +0.2
3,769,088 + OLJFJH_17950 0.65 -0.1
3,769,088 + OLJFJH_17950 0.65 -0.1
3,769,211 - OLJFJH_17950 0.72 -1.9
3,769,243 - OLJFJH_17950 0.74 -0.5
3,769,491 - OLJFJH_17950 0.87 +0.6
3,769,689 + +1.2
3,769,770 - -1.8
3,769,872 - +1.0
3,769,872 - -2.6
3,769,887 - +3.0
3,769,891 + +2.2
3,769,891 + +1.6
3,769,891 + -2.3
3,769,891 + +0.8
3,769,892 - -1.5
3,769,892 - -1.6
3,769,892 - -2.7
3,770,024 + OLJFJH_17955 0.24 -3.2
3,770,025 - OLJFJH_17955 0.24 -0.7
3,770,025 - OLJFJH_17955 0.24 +1.8
3,770,186 + OLJFJH_17955 0.83 +2.2
3,770,225 + +0.1
3,770,416 + +0.4
3,770,468 + -0.3
3,770,468 + -0.2
3,770,497 + +0.6
3,770,497 + +0.2
3,770,498 - -3.0
3,770,498 - +1.2
3,770,508 + -0.1
3,770,692 + OLJFJH_17960 0.11 +1.6
3,770,692 + OLJFJH_17960 0.11 +0.6
3,770,820 - OLJFJH_17960 0.16 -0.2
3,770,919 - OLJFJH_17960 0.20 +0.4
3,771,045 - OLJFJH_17960 0.26 -0.4
3,771,168 + OLJFJH_17960 0.31 -0.7
3,771,191 + OLJFJH_17960 0.32 -0.5
3,771,191 + OLJFJH_17960 0.32 -0.4
3,771,191 + OLJFJH_17960 0.32 +2.6
3,771,191 + OLJFJH_17960 0.32 +2.5
3,771,191 + OLJFJH_17960 0.32 -1.6
3,771,192 - OLJFJH_17960 0.32 +2.8
3,771,205 - OLJFJH_17960 0.32 +0.6

Or see this region's nucleotide sequence