Strain Fitness in Erwinia amylovora T8 around OLJFJH_17070

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_17065 and OLJFJH_17070 are separated by 177 nucleotidesOLJFJH_17070 and OLJFJH_17075 are separated by 116 nucleotides OLJFJH_17065: OLJFJH_17065 - tryptophan permease, at 3,604,761 to 3,606,005 _17065 OLJFJH_17070: OLJFJH_17070 - hypothetical protein, at 3,606,183 to 3,606,302 _17070 OLJFJH_17075: OLJFJH_17075 - glutamine--tRNA ligase, at 3,606,419 to 3,608,086 _17075 Position (kb) 3606 3607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3605.205 kb on - strand, within OLJFJH_17065at 3605.241 kb on - strand, within OLJFJH_17065at 3605.290 kb on + strand, within OLJFJH_17065at 3605.291 kb on - strand, within OLJFJH_17065at 3605.440 kb on + strand, within OLJFJH_17065at 3605.441 kb on - strand, within OLJFJH_17065at 3605.546 kb on + strand, within OLJFJH_17065at 3605.690 kb on + strand, within OLJFJH_17065at 3605.690 kb on + strand, within OLJFJH_17065at 3605.691 kb on - strand, within OLJFJH_17065at 3605.692 kb on + strand, within OLJFJH_17065at 3605.692 kb on + strand, within OLJFJH_17065at 3605.693 kb on - strand, within OLJFJH_17065at 3605.693 kb on - strand, within OLJFJH_17065at 3605.698 kb on + strand, within OLJFJH_17065at 3605.698 kb on + strand, within OLJFJH_17065at 3605.698 kb on + strand, within OLJFJH_17065at 3605.698 kb on + strand, within OLJFJH_17065at 3605.699 kb on - strand, within OLJFJH_17065at 3605.699 kb on - strand, within OLJFJH_17065at 3605.699 kb on - strand, within OLJFJH_17065at 3605.824 kb on + strand, within OLJFJH_17065at 3605.825 kb on - strand, within OLJFJH_17065at 3605.825 kb on - strand, within OLJFJH_17065at 3605.979 kb on + strandat 3605.980 kb on - strandat 3606.032 kb on - strandat 3606.083 kb on + strandat 3606.083 kb on + strandat 3606.083 kb on + strandat 3606.083 kb on + strandat 3606.084 kb on - strandat 3606.084 kb on - strandat 3606.089 kb on - strandat 3606.089 kb on - strandat 3606.089 kb on - strandat 3606.089 kb on - strandat 3606.198 kb on + strand, within OLJFJH_17070at 3606.198 kb on + strand, within OLJFJH_17070at 3606.199 kb on - strand, within OLJFJH_17070at 3606.267 kb on - strand, within OLJFJH_17070at 3606.302 kb on + strandat 3606.314 kb on - strandat 3606.361 kb on + strandat 3606.400 kb on + strandat 3606.401 kb on - strandat 3606.401 kb on - strandat 3606.409 kb on - strandat 3606.409 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
remove
3,605,205 - OLJFJH_17065 0.36 +3.0
3,605,241 - OLJFJH_17065 0.39 -0.4
3,605,290 + OLJFJH_17065 0.42 +0.1
3,605,291 - OLJFJH_17065 0.43 +1.5
3,605,440 + OLJFJH_17065 0.55 +0.2
3,605,441 - OLJFJH_17065 0.55 +0.2
3,605,546 + OLJFJH_17065 0.63 -2.7
3,605,690 + OLJFJH_17065 0.75 -1.1
3,605,690 + OLJFJH_17065 0.75 -1.2
3,605,691 - OLJFJH_17065 0.75 -1.0
3,605,692 + OLJFJH_17065 0.75 -3.3
3,605,692 + OLJFJH_17065 0.75 -3.4
3,605,693 - OLJFJH_17065 0.75 -0.0
3,605,693 - OLJFJH_17065 0.75 +0.1
3,605,698 + OLJFJH_17065 0.75 +0.1
3,605,698 + OLJFJH_17065 0.75 -0.3
3,605,698 + OLJFJH_17065 0.75 -3.3
3,605,698 + OLJFJH_17065 0.75 -2.1
3,605,699 - OLJFJH_17065 0.75 +0.5
3,605,699 - OLJFJH_17065 0.75 -1.8
3,605,699 - OLJFJH_17065 0.75 +0.2
3,605,824 + OLJFJH_17065 0.85 +0.1
3,605,825 - OLJFJH_17065 0.85 -0.4
3,605,825 - OLJFJH_17065 0.85 +0.6
3,605,979 + -0.7
3,605,980 - +0.7
3,606,032 - -0.6
3,606,083 + -1.0
3,606,083 + +1.4
3,606,083 + +1.6
3,606,083 + -0.6
3,606,084 - -3.3
3,606,084 - -2.5
3,606,089 - -3.2
3,606,089 - +0.4
3,606,089 - +1.7
3,606,089 - +0.1
3,606,198 + OLJFJH_17070 0.12 -4.2
3,606,198 + OLJFJH_17070 0.12 +1.5
3,606,199 - OLJFJH_17070 0.13 +1.7
3,606,267 - OLJFJH_17070 0.70 -1.7
3,606,302 + +0.5
3,606,314 - +0.6
3,606,361 + +0.6
3,606,400 + +0.2
3,606,401 - -0.4
3,606,401 - -1.2
3,606,409 - -0.1
3,606,409 - -0.6

Or see this region's nucleotide sequence