Strain Fitness in Erwinia amylovora T8 around OLJFJH_16550

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16545 and OLJFJH_16550 are separated by 124 nucleotidesOLJFJH_16550 and OLJFJH_16555 are separated by 31 nucleotides OLJFJH_16545: OLJFJH_16545 - urocanate hydratase, at 3,492,892 to 3,494,577 _16545 OLJFJH_16550: OLJFJH_16550 - amidohydrolase, at 3,494,702 to 3,495,868 _16550 OLJFJH_16555: OLJFJH_16555 - DNA-binding protein YbiB, at 3,495,900 to 3,496,871 _16555 Position (kb) 3494 3495 3496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3493.727 kb on - strand, within OLJFJH_16545at 3493.770 kb on + strand, within OLJFJH_16545at 3494.022 kb on + strand, within OLJFJH_16545at 3494.026 kb on + strand, within OLJFJH_16545at 3494.028 kb on + strand, within OLJFJH_16545at 3494.029 kb on - strand, within OLJFJH_16545at 3494.468 kb on + strandat 3494.469 kb on - strandat 3494.469 kb on - strandat 3494.557 kb on - strandat 3494.575 kb on + strandat 3494.576 kb on - strandat 3494.616 kb on - strandat 3494.650 kb on - strandat 3494.701 kb on + strandat 3494.708 kb on - strandat 3495.119 kb on - strand, within OLJFJH_16550at 3495.661 kb on + strand, within OLJFJH_16550at 3495.723 kb on - strand, within OLJFJH_16550at 3496.174 kb on + strand, within OLJFJH_16555at 3496.174 kb on + strand, within OLJFJH_16555at 3496.175 kb on - strand, within OLJFJH_16555at 3496.175 kb on - strand, within OLJFJH_16555at 3496.252 kb on + strand, within OLJFJH_16555at 3496.253 kb on - strand, within OLJFJH_16555at 3496.485 kb on + strand, within OLJFJH_16555at 3496.500 kb on - strand, within OLJFJH_16555at 3496.502 kb on + strand, within OLJFJH_16555at 3496.502 kb on + strand, within OLJFJH_16555at 3496.503 kb on - strand, within OLJFJH_16555at 3496.595 kb on + strand, within OLJFJH_16555at 3496.596 kb on - strand, within OLJFJH_16555at 3496.607 kb on + strand, within OLJFJH_16555at 3496.609 kb on + strand, within OLJFJH_16555at 3496.609 kb on + strand, within OLJFJH_16555at 3496.609 kb on + strand, within OLJFJH_16555at 3496.609 kb on + strand, within OLJFJH_16555at 3496.609 kb on + strand, within OLJFJH_16555at 3496.610 kb on - strand, within OLJFJH_16555at 3496.610 kb on - strand, within OLJFJH_16555at 3496.610 kb on - strand, within OLJFJH_16555at 3496.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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3,493,727 - OLJFJH_16545 0.50 +0.0
3,493,770 + OLJFJH_16545 0.52 +0.2
3,494,022 + OLJFJH_16545 0.67 -0.3
3,494,026 + OLJFJH_16545 0.67 -0.8
3,494,028 + OLJFJH_16545 0.67 -2.0
3,494,029 - OLJFJH_16545 0.67 -2.5
3,494,468 + -1.8
3,494,469 - +0.0
3,494,469 - -0.7
3,494,557 - +0.9
3,494,575 + +0.1
3,494,576 - -1.8
3,494,616 - +1.7
3,494,650 - -0.6
3,494,701 + +0.1
3,494,708 - -3.2
3,495,119 - OLJFJH_16550 0.36 +2.2
3,495,661 + OLJFJH_16550 0.82 -3.5
3,495,723 - OLJFJH_16550 0.87 -1.1
3,496,174 + OLJFJH_16555 0.28 -0.8
3,496,174 + OLJFJH_16555 0.28 -1.0
3,496,175 - OLJFJH_16555 0.28 +0.5
3,496,175 - OLJFJH_16555 0.28 -3.4
3,496,252 + OLJFJH_16555 0.36 +0.0
3,496,253 - OLJFJH_16555 0.36 +0.4
3,496,485 + OLJFJH_16555 0.60 -0.3
3,496,500 - OLJFJH_16555 0.62 +0.4
3,496,502 + OLJFJH_16555 0.62 +0.2
3,496,502 + OLJFJH_16555 0.62 -0.3
3,496,503 - OLJFJH_16555 0.62 -3.7
3,496,595 + OLJFJH_16555 0.72 +0.6
3,496,596 - OLJFJH_16555 0.72 -3.1
3,496,607 + OLJFJH_16555 0.73 -2.3
3,496,609 + OLJFJH_16555 0.73 -1.0
3,496,609 + OLJFJH_16555 0.73 +0.4
3,496,609 + OLJFJH_16555 0.73 -0.6
3,496,609 + OLJFJH_16555 0.73 +0.4
3,496,609 + OLJFJH_16555 0.73 -0.7
3,496,610 - OLJFJH_16555 0.73 +0.2
3,496,610 - OLJFJH_16555 0.73 +0.9
3,496,610 - OLJFJH_16555 0.73 +0.4
3,496,865 - -0.2

Or see this region's nucleotide sequence