Strain Fitness in Erwinia amylovora T8 around OLJFJH_15065

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15060 and OLJFJH_15065 are separated by 341 nucleotidesOLJFJH_15065 and OLJFJH_15070 overlap by 23 nucleotidesOLJFJH_15070 and OLJFJH_15075 are separated by 42 nucleotidesOLJFJH_15075 and OLJFJH_15080 overlap by 1 nucleotides OLJFJH_15060: OLJFJH_15060 - type III secretion system protein, at 3,181,381 to 3,182,247 _15060 OLJFJH_15065: OLJFJH_15065 - PrgH/EprH family type III secretion apparatus protein, at 3,182,589 to 3,183,848 _15065 OLJFJH_15070: OLJFJH_15070 - type III secretion system needle filament subunit SctF, at 3,183,826 to 3,184,098 _15070 OLJFJH_15075: OLJFJH_15075 - type III secretion system inner rod subunit SctI, at 3,184,141 to 3,184,464 _15075 OLJFJH_15080: OLJFJH_15080 - type III secretion inner membrane ring lipoprotein SctJ, at 3,184,464 to 3,185,243 _15080 Position (kb) 3182 3183 3184Strain fitness (log2 ratio) -2 -1 0 1 2at 3181.645 kb on - strand, within OLJFJH_15060at 3182.278 kb on - strandat 3182.500 kb on - strandat 3182.601 kb on - strandat 3182.639 kb on + strandat 3182.713 kb on - strandat 3182.789 kb on - strand, within OLJFJH_15065at 3182.857 kb on + strand, within OLJFJH_15065at 3183.035 kb on + strand, within OLJFJH_15065at 3183.035 kb on + strand, within OLJFJH_15065at 3184.082 kb on + strandat 3184.138 kb on + strandat 3184.138 kb on + strandat 3184.316 kb on + strand, within OLJFJH_15075at 3184.317 kb on - strand, within OLJFJH_15075at 3184.601 kb on + strand, within OLJFJH_15080

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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3,181,645 - OLJFJH_15060 0.30 -1.2
3,182,278 - +0.5
3,182,500 - -0.7
3,182,601 - +0.1
3,182,639 + +1.9
3,182,713 - +1.1
3,182,789 - OLJFJH_15065 0.16 +0.2
3,182,857 + OLJFJH_15065 0.21 +1.0
3,183,035 + OLJFJH_15065 0.35 +1.5
3,183,035 + OLJFJH_15065 0.35 +0.3
3,184,082 + +0.8
3,184,138 + -0.2
3,184,138 + +0.1
3,184,316 + OLJFJH_15075 0.54 -0.5
3,184,317 - OLJFJH_15075 0.54 -2.2
3,184,601 + OLJFJH_15080 0.18 -1.2

Or see this region's nucleotide sequence