Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_15060 and OLJFJH_15065 are separated by 341 nucleotides OLJFJH_15065 and OLJFJH_15070 overlap by 23 nucleotides OLJFJH_15070 and OLJFJH_15075 are separated by 42 nucleotides OLJFJH_15075 and OLJFJH_15080 overlap by 1 nucleotides
OLJFJH_15060: OLJFJH_15060 - type III secretion system protein, at 3,181,381 to 3,182,247
_15060
OLJFJH_15065: OLJFJH_15065 - PrgH/EprH family type III secretion apparatus protein, at 3,182,589 to 3,183,848
_15065
OLJFJH_15070: OLJFJH_15070 - type III secretion system needle filament subunit SctF, at 3,183,826 to 3,184,098
_15070
OLJFJH_15075: OLJFJH_15075 - type III secretion system inner rod subunit SctI, at 3,184,141 to 3,184,464
_15075
OLJFJH_15080: OLJFJH_15080 - type III secretion inner membrane ring lipoprotein SctJ, at 3,184,464 to 3,185,243
_15080
Position (kb)
3182
3183
3184 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3181.645 kb on - strand, within OLJFJH_15060 at 3182.278 kb on - strand at 3182.500 kb on - strand at 3182.601 kb on - strand at 3182.639 kb on + strand at 3182.713 kb on - strand at 3182.789 kb on - strand, within OLJFJH_15065 at 3182.857 kb on + strand, within OLJFJH_15065 at 3183.035 kb on + strand, within OLJFJH_15065 at 3183.035 kb on + strand, within OLJFJH_15065 at 3184.082 kb on + strand at 3184.138 kb on + strand at 3184.138 kb on + strand at 3184.316 kb on + strand, within OLJFJH_15075 at 3184.317 kb on - strand, within OLJFJH_15075 at 3184.601 kb on + strand, within OLJFJH_15080
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 3,181,645 - OLJFJH_15060 0.30 -1.2 3,182,278 - +0.5 3,182,500 - -0.7 3,182,601 - +0.1 3,182,639 + +1.9 3,182,713 - +1.1 3,182,789 - OLJFJH_15065 0.16 +0.2 3,182,857 + OLJFJH_15065 0.21 +1.0 3,183,035 + OLJFJH_15065 0.35 +1.5 3,183,035 + OLJFJH_15065 0.35 +0.3 3,184,082 + +0.8 3,184,138 + -0.2 3,184,138 + +0.1 3,184,316 + OLJFJH_15075 0.54 -0.5 3,184,317 - OLJFJH_15075 0.54 -2.2 3,184,601 + OLJFJH_15080 0.18 -1.2
Or see this region's nucleotide sequence