Strain Fitness in Erwinia amylovora T8 around OLJFJH_15010

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_15000 and OLJFJH_15005 are separated by 12 nucleotidesOLJFJH_15005 and OLJFJH_15010 overlap by 4 nucleotidesOLJFJH_15010 and OLJFJH_15015 overlap by 8 nucleotidesOLJFJH_15015 and OLJFJH_15020 overlap by 4 nucleotides OLJFJH_15000: OLJFJH_15000 - type III secretion system export apparatus subunit SctT, at 3,170,774 to 3,171,544 _15000 OLJFJH_15005: OLJFJH_15005 - type III secretion system export apparatus subunit SctS, at 3,171,557 to 3,171,811 _15005 OLJFJH_15010: OLJFJH_15010 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 3,171,808 to 3,172,479 _15010 OLJFJH_15015: OLJFJH_15015 - Type III flagellar switch regulator (C-ring) FliN C-term, at 3,172,472 to 3,173,395 _15015 OLJFJH_15020: OLJFJH_15020 - hypothetical protein, at 3,173,392 to 3,173,682 _15020 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3171.011 kb on + strand, within OLJFJH_15000at 3171.484 kb on - strandat 3171.635 kb on - strand, within OLJFJH_15005at 3171.645 kb on - strand, within OLJFJH_15005at 3172.349 kb on - strand, within OLJFJH_15010at 3172.351 kb on - strand, within OLJFJH_15010at 3172.681 kb on + strand, within OLJFJH_15015at 3172.934 kb on + strand, within OLJFJH_15015at 3172.934 kb on + strand, within OLJFJH_15015at 3173.052 kb on - strand, within OLJFJH_15015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
remove
3,171,011 + OLJFJH_15000 0.31 -2.1
3,171,484 - -1.6
3,171,635 - OLJFJH_15005 0.31 -0.9
3,171,645 - OLJFJH_15005 0.35 +1.3
3,172,349 - OLJFJH_15010 0.81 -0.5
3,172,351 - OLJFJH_15010 0.81 +1.6
3,172,681 + OLJFJH_15015 0.23 -1.0
3,172,934 + OLJFJH_15015 0.50 +2.9
3,172,934 + OLJFJH_15015 0.50 +2.0
3,173,052 - OLJFJH_15015 0.63 +0.1

Or see this region's nucleotide sequence