Strain Fitness in Erwinia amylovora T8 around OLJFJH_14990

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14985 and OLJFJH_14990 overlap by 4 nucleotidesOLJFJH_14990 and OLJFJH_14995 are separated by 143 nucleotides OLJFJH_14985: OLJFJH_14985 - cell division protein FtsQ, at 3,167,069 to 3,168,970 _14985 OLJFJH_14990: OLJFJH_14990 - SycD/LcrH family type III secretion system chaperone, at 3,168,967 to 3,169,524 _14990 OLJFJH_14995: OLJFJH_14995 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 3,169,668 to 3,170,759 _14995 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3168.097 kb on + strand, within OLJFJH_14985at 3168.098 kb on - strand, within OLJFJH_14985at 3168.154 kb on + strand, within OLJFJH_14985at 3168.495 kb on + strand, within OLJFJH_14985at 3168.496 kb on - strand, within OLJFJH_14985at 3168.623 kb on - strand, within OLJFJH_14985at 3168.691 kb on - strand, within OLJFJH_14985at 3169.066 kb on - strand, within OLJFJH_14990at 3169.094 kb on - strand, within OLJFJH_14990at 3169.193 kb on + strand, within OLJFJH_14990at 3169.205 kb on + strand, within OLJFJH_14990at 3169.571 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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3,168,097 + OLJFJH_14985 0.54 -4.3
3,168,098 - OLJFJH_14985 0.54 +0.3
3,168,154 + OLJFJH_14985 0.57 -1.0
3,168,495 + OLJFJH_14985 0.75 -2.0
3,168,496 - OLJFJH_14985 0.75 -0.0
3,168,623 - OLJFJH_14985 0.82 -1.5
3,168,691 - OLJFJH_14985 0.85 +2.0
3,169,066 - OLJFJH_14990 0.18 -0.1
3,169,094 - OLJFJH_14990 0.23 +0.9
3,169,193 + OLJFJH_14990 0.41 +2.9
3,169,205 + OLJFJH_14990 0.43 +0.1
3,169,571 + +1.6

Or see this region's nucleotide sequence