Strain Fitness in Erwinia amylovora T8 around OLJFJH_14670

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14660 and OLJFJH_14665 are separated by 235 nucleotidesOLJFJH_14665 and OLJFJH_14670 are separated by 209 nucleotidesOLJFJH_14670 and OLJFJH_14675 overlap by 46 nucleotidesOLJFJH_14675 and OLJFJH_14680 are separated by 291 nucleotides OLJFJH_14660: OLJFJH_14660 - endopeptidase, at 3,096,481 to 3,096,939 _14660 OLJFJH_14665: OLJFJH_14665 - glutathione peroxidase, at 3,097,175 to 3,097,720 _14665 OLJFJH_14670: OLJFJH_14670 - hypothetical protein, at 3,097,930 to 3,098,079 _14670 OLJFJH_14675: OLJFJH_14675 - hypothetical protein, at 3,098,034 to 3,098,660 _14675 OLJFJH_14680: OLJFJH_14680 - Integration host factor subunit alpha, at 3,098,952 to 3,099,251 _14680 Position (kb) 3097 3098 3099Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3096.994 kb on + strandat 3097.011 kb on + strandat 3097.012 kb on - strandat 3097.095 kb on + strandat 3097.096 kb on - strandat 3097.125 kb on - strandat 3097.176 kb on + strandat 3097.353 kb on - strand, within OLJFJH_14665at 3097.468 kb on - strand, within OLJFJH_14665at 3097.491 kb on - strand, within OLJFJH_14665at 3097.576 kb on + strand, within OLJFJH_14665at 3097.576 kb on + strand, within OLJFJH_14665at 3097.576 kb on + strand, within OLJFJH_14665at 3097.577 kb on - strand, within OLJFJH_14665at 3097.580 kb on + strand, within OLJFJH_14665at 3097.580 kb on + strand, within OLJFJH_14665at 3097.842 kb on - strandat 3097.861 kb on + strandat 3097.897 kb on + strandat 3097.897 kb on + strandat 3097.897 kb on + strandat 3097.898 kb on - strandat 3097.898 kb on - strandat 3097.933 kb on + strandat 3097.992 kb on + strand, within OLJFJH_14670at 3098.025 kb on + strand, within OLJFJH_14670at 3098.050 kb on - strandat 3098.061 kb on - strandat 3098.149 kb on - strand, within OLJFJH_14675at 3098.149 kb on - strand, within OLJFJH_14675at 3098.170 kb on + strand, within OLJFJH_14675at 3098.171 kb on - strand, within OLJFJH_14675at 3098.177 kb on - strand, within OLJFJH_14675at 3098.211 kb on - strand, within OLJFJH_14675at 3098.318 kb on - strand, within OLJFJH_14675at 3098.394 kb on - strand, within OLJFJH_14675at 3098.423 kb on - strand, within OLJFJH_14675at 3098.549 kb on + strand, within OLJFJH_14675at 3098.550 kb on - strand, within OLJFJH_14675at 3098.564 kb on + strand, within OLJFJH_14675at 3098.565 kb on - strand, within OLJFJH_14675at 3098.726 kb on - strandat 3098.726 kb on - strandat 3098.726 kb on - strandat 3098.756 kb on - strandat 3098.816 kb on + strandat 3098.818 kb on + strandat 3098.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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3,096,994 + +1.2
3,097,011 + -0.9
3,097,012 - +1.5
3,097,095 + +1.2
3,097,096 - -0.6
3,097,125 - -0.6
3,097,176 + +0.1
3,097,353 - OLJFJH_14665 0.33 -0.7
3,097,468 - OLJFJH_14665 0.54 +0.3
3,097,491 - OLJFJH_14665 0.58 +0.2
3,097,576 + OLJFJH_14665 0.73 -2.4
3,097,576 + OLJFJH_14665 0.73 +0.7
3,097,576 + OLJFJH_14665 0.73 +0.1
3,097,577 - OLJFJH_14665 0.74 -0.4
3,097,580 + OLJFJH_14665 0.74 -0.4
3,097,580 + OLJFJH_14665 0.74 +1.0
3,097,842 - +0.4
3,097,861 + -0.0
3,097,897 + +0.1
3,097,897 + -0.9
3,097,897 + -2.1
3,097,898 - -0.3
3,097,898 - +0.1
3,097,933 + -0.5
3,097,992 + OLJFJH_14670 0.41 +1.5
3,098,025 + OLJFJH_14670 0.63 +0.8
3,098,050 - +0.4
3,098,061 - +0.3
3,098,149 - OLJFJH_14675 0.18 +0.1
3,098,149 - OLJFJH_14675 0.18 -0.2
3,098,170 + OLJFJH_14675 0.22 +0.7
3,098,171 - OLJFJH_14675 0.22 +0.2
3,098,177 - OLJFJH_14675 0.23 +1.0
3,098,211 - OLJFJH_14675 0.28 -1.4
3,098,318 - OLJFJH_14675 0.45 +1.3
3,098,394 - OLJFJH_14675 0.57 -4.8
3,098,423 - OLJFJH_14675 0.62 -0.9
3,098,549 + OLJFJH_14675 0.82 -1.0
3,098,550 - OLJFJH_14675 0.82 -0.1
3,098,564 + OLJFJH_14675 0.85 +1.0
3,098,565 - OLJFJH_14675 0.85 +1.0
3,098,726 - +0.5
3,098,726 - -0.5
3,098,726 - +0.4
3,098,756 - -0.5
3,098,816 + +1.0
3,098,818 + -2.7
3,098,819 - -2.1

Or see this region's nucleotide sequence