Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_13615 and OLJFJH_13620 are separated by 153 nucleotides OLJFJH_13620 and OLJFJH_13625 overlap by 7 nucleotides OLJFJH_13625 and OLJFJH_13630 are separated by 274 nucleotides
OLJFJH_13615: OLJFJH_13615 - DUF2931 domain-containing protein, at 2,867,110 to 2,867,769
_13615
OLJFJH_13620: OLJFJH_13620 - DUF2931 domain-containing protein, at 2,867,923 to 2,868,582
_13620
OLJFJH_13625: OLJFJH_13625 - type VI secretion protein, at 2,868,576 to 2,870,465
_13625
OLJFJH_13630: OLJFJH_13630 - LysR family transcriptional regulator, at 2,870,740 to 2,871,648
_13630
Position (kb)
2868
2869
2870
2871 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 2867.784 kb on - strand at 2868.644 kb on + strand at 2868.728 kb on + strand at 2868.728 kb on + strand at 2868.729 kb on - strand at 2868.729 kb on - strand at 2868.730 kb on + strand at 2868.810 kb on + strand, within OLJFJH_13625 at 2869.053 kb on - strand, within OLJFJH_13625 at 2869.095 kb on + strand, within OLJFJH_13625 at 2869.316 kb on + strand, within OLJFJH_13625 at 2869.402 kb on - strand, within OLJFJH_13625 at 2869.513 kb on - strand, within OLJFJH_13625 at 2869.639 kb on - strand, within OLJFJH_13625 at 2869.783 kb on + strand, within OLJFJH_13625 at 2869.783 kb on + strand, within OLJFJH_13625 at 2869.783 kb on + strand, within OLJFJH_13625 at 2869.784 kb on - strand, within OLJFJH_13625 at 2869.831 kb on + strand, within OLJFJH_13625 at 2869.839 kb on - strand, within OLJFJH_13625 at 2869.850 kb on - strand, within OLJFJH_13625 at 2869.854 kb on - strand, within OLJFJH_13625 at 2869.854 kb on - strand, within OLJFJH_13625 at 2869.854 kb on - strand, within OLJFJH_13625 at 2869.861 kb on + strand, within OLJFJH_13625 at 2869.862 kb on - strand, within OLJFJH_13625 at 2869.865 kb on - strand, within OLJFJH_13625 at 2869.871 kb on + strand, within OLJFJH_13625 at 2869.871 kb on + strand, within OLJFJH_13625 at 2869.897 kb on - strand, within OLJFJH_13625 at 2869.960 kb on + strand, within OLJFJH_13625 at 2869.961 kb on - strand, within OLJFJH_13625 at 2870.105 kb on + strand, within OLJFJH_13625 at 2870.188 kb on + strand, within OLJFJH_13625 at 2870.320 kb on + strand at 2870.321 kb on - strand at 2870.334 kb on + strand at 2870.334 kb on + strand at 2870.351 kb on + strand at 2870.482 kb on + strand at 2870.508 kb on + strand at 2870.512 kb on + strand at 2870.547 kb on + strand at 2870.547 kb on + strand at 2870.547 kb on + strand at 2870.574 kb on - strand at 2870.611 kb on + strand at 2870.613 kb on + strand at 2870.613 kb on + strand at 2870.614 kb on - strand at 2870.730 kb on + strand at 2871.045 kb on + strand, within OLJFJH_13630 at 2871.154 kb on - strand, within OLJFJH_13630 at 2871.195 kb on - strand, within OLJFJH_13630 at 2871.210 kb on - strand, within OLJFJH_13630 at 2871.285 kb on + strand, within OLJFJH_13630 at 2871.346 kb on + strand, within OLJFJH_13630 at 2871.358 kb on + strand, within OLJFJH_13630 at 2871.359 kb on - strand, within OLJFJH_13630 at 2871.423 kb on - strand, within OLJFJH_13630 at 2871.423 kb on - strand, within OLJFJH_13630 at 2871.449 kb on + strand, within OLJFJH_13630 at 2871.465 kb on + strand, within OLJFJH_13630
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 2,867,784 - -0.8 2,868,644 + -2.7 2,868,728 + -0.3 2,868,728 + -0.9 2,868,729 - -0.8 2,868,729 - -0.7 2,868,730 + +0.6 2,868,810 + OLJFJH_13625 0.12 +0.5 2,869,053 - OLJFJH_13625 0.25 +0.7 2,869,095 + OLJFJH_13625 0.27 -0.8 2,869,316 + OLJFJH_13625 0.39 +1.1 2,869,402 - OLJFJH_13625 0.44 -3.1 2,869,513 - OLJFJH_13625 0.50 +0.3 2,869,639 - OLJFJH_13625 0.56 -0.5 2,869,783 + OLJFJH_13625 0.64 +0.8 2,869,783 + OLJFJH_13625 0.64 +8.9 2,869,783 + OLJFJH_13625 0.64 +2.4 2,869,784 - OLJFJH_13625 0.64 -0.6 2,869,831 + OLJFJH_13625 0.66 +2.1 2,869,839 - OLJFJH_13625 0.67 -1.8 2,869,850 - OLJFJH_13625 0.67 +0.5 2,869,854 - OLJFJH_13625 0.68 +0.7 2,869,854 - OLJFJH_13625 0.68 +2.4 2,869,854 - OLJFJH_13625 0.68 -1.4 2,869,861 + OLJFJH_13625 0.68 +0.1 2,869,862 - OLJFJH_13625 0.68 -1.0 2,869,865 - OLJFJH_13625 0.68 -0.4 2,869,871 + OLJFJH_13625 0.69 -2.7 2,869,871 + OLJFJH_13625 0.69 -0.2 2,869,897 - OLJFJH_13625 0.70 +1.1 2,869,960 + OLJFJH_13625 0.73 +0.5 2,869,961 - OLJFJH_13625 0.73 -1.5 2,870,105 + OLJFJH_13625 0.81 +0.6 2,870,188 + OLJFJH_13625 0.85 -3.0 2,870,320 + -3.1 2,870,321 - +1.4 2,870,334 + -0.3 2,870,334 + +0.2 2,870,351 + -0.7 2,870,482 + -2.2 2,870,508 + -3.9 2,870,512 + +1.3 2,870,547 + +1.1 2,870,547 + -0.6 2,870,547 + -2.2 2,870,574 - -3.1 2,870,611 + -0.0 2,870,613 + +0.5 2,870,613 + +0.1 2,870,614 - -0.3 2,870,730 + -2.0 2,871,045 + OLJFJH_13630 0.34 +2.1 2,871,154 - OLJFJH_13630 0.46 -0.6 2,871,195 - OLJFJH_13630 0.50 -1.7 2,871,210 - OLJFJH_13630 0.52 -0.0 2,871,285 + OLJFJH_13630 0.60 +0.0 2,871,346 + OLJFJH_13630 0.67 +0.5 2,871,358 + OLJFJH_13630 0.68 +0.4 2,871,359 - OLJFJH_13630 0.68 -0.6 2,871,423 - OLJFJH_13630 0.75 +0.3 2,871,423 - OLJFJH_13630 0.75 +1.2 2,871,449 + OLJFJH_13630 0.78 +0.0 2,871,465 + OLJFJH_13630 0.80 -0.7
Or see this region's nucleotide sequence