Strain Fitness in Erwinia amylovora T8 around OLJFJH_13625

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_13615 and OLJFJH_13620 are separated by 153 nucleotidesOLJFJH_13620 and OLJFJH_13625 overlap by 7 nucleotidesOLJFJH_13625 and OLJFJH_13630 are separated by 274 nucleotides OLJFJH_13615: OLJFJH_13615 - DUF2931 domain-containing protein, at 2,867,110 to 2,867,769 _13615 OLJFJH_13620: OLJFJH_13620 - DUF2931 domain-containing protein, at 2,867,923 to 2,868,582 _13620 OLJFJH_13625: OLJFJH_13625 - type VI secretion protein, at 2,868,576 to 2,870,465 _13625 OLJFJH_13630: OLJFJH_13630 - LysR family transcriptional regulator, at 2,870,740 to 2,871,648 _13630 Position (kb) 2868 2869 2870 2871Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 2867.784 kb on - strandat 2868.644 kb on + strandat 2868.728 kb on + strandat 2868.728 kb on + strandat 2868.729 kb on - strandat 2868.729 kb on - strandat 2868.730 kb on + strandat 2868.810 kb on + strand, within OLJFJH_13625at 2869.053 kb on - strand, within OLJFJH_13625at 2869.095 kb on + strand, within OLJFJH_13625at 2869.316 kb on + strand, within OLJFJH_13625at 2869.402 kb on - strand, within OLJFJH_13625at 2869.513 kb on - strand, within OLJFJH_13625at 2869.639 kb on - strand, within OLJFJH_13625at 2869.783 kb on + strand, within OLJFJH_13625at 2869.783 kb on + strand, within OLJFJH_13625at 2869.783 kb on + strand, within OLJFJH_13625at 2869.784 kb on - strand, within OLJFJH_13625at 2869.831 kb on + strand, within OLJFJH_13625at 2869.839 kb on - strand, within OLJFJH_13625at 2869.850 kb on - strand, within OLJFJH_13625at 2869.854 kb on - strand, within OLJFJH_13625at 2869.854 kb on - strand, within OLJFJH_13625at 2869.854 kb on - strand, within OLJFJH_13625at 2869.861 kb on + strand, within OLJFJH_13625at 2869.862 kb on - strand, within OLJFJH_13625at 2869.865 kb on - strand, within OLJFJH_13625at 2869.871 kb on + strand, within OLJFJH_13625at 2869.871 kb on + strand, within OLJFJH_13625at 2869.897 kb on - strand, within OLJFJH_13625at 2869.960 kb on + strand, within OLJFJH_13625at 2869.961 kb on - strand, within OLJFJH_13625at 2870.105 kb on + strand, within OLJFJH_13625at 2870.188 kb on + strand, within OLJFJH_13625at 2870.320 kb on + strandat 2870.321 kb on - strandat 2870.334 kb on + strandat 2870.334 kb on + strandat 2870.351 kb on + strandat 2870.482 kb on + strandat 2870.508 kb on + strandat 2870.512 kb on + strandat 2870.547 kb on + strandat 2870.547 kb on + strandat 2870.547 kb on + strandat 2870.574 kb on - strandat 2870.611 kb on + strandat 2870.613 kb on + strandat 2870.613 kb on + strandat 2870.614 kb on - strandat 2870.730 kb on + strandat 2871.045 kb on + strand, within OLJFJH_13630at 2871.154 kb on - strand, within OLJFJH_13630at 2871.195 kb on - strand, within OLJFJH_13630at 2871.210 kb on - strand, within OLJFJH_13630at 2871.285 kb on + strand, within OLJFJH_13630at 2871.346 kb on + strand, within OLJFJH_13630at 2871.358 kb on + strand, within OLJFJH_13630at 2871.359 kb on - strand, within OLJFJH_13630at 2871.423 kb on - strand, within OLJFJH_13630at 2871.423 kb on - strand, within OLJFJH_13630at 2871.449 kb on + strand, within OLJFJH_13630at 2871.465 kb on + strand, within OLJFJH_13630

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,867,784 - -0.8
2,868,644 + -2.7
2,868,728 + -0.3
2,868,728 + -0.9
2,868,729 - -0.8
2,868,729 - -0.7
2,868,730 + +0.6
2,868,810 + OLJFJH_13625 0.12 +0.5
2,869,053 - OLJFJH_13625 0.25 +0.7
2,869,095 + OLJFJH_13625 0.27 -0.8
2,869,316 + OLJFJH_13625 0.39 +1.1
2,869,402 - OLJFJH_13625 0.44 -3.1
2,869,513 - OLJFJH_13625 0.50 +0.3
2,869,639 - OLJFJH_13625 0.56 -0.5
2,869,783 + OLJFJH_13625 0.64 +0.8
2,869,783 + OLJFJH_13625 0.64 +8.9
2,869,783 + OLJFJH_13625 0.64 +2.4
2,869,784 - OLJFJH_13625 0.64 -0.6
2,869,831 + OLJFJH_13625 0.66 +2.1
2,869,839 - OLJFJH_13625 0.67 -1.8
2,869,850 - OLJFJH_13625 0.67 +0.5
2,869,854 - OLJFJH_13625 0.68 +0.7
2,869,854 - OLJFJH_13625 0.68 +2.4
2,869,854 - OLJFJH_13625 0.68 -1.4
2,869,861 + OLJFJH_13625 0.68 +0.1
2,869,862 - OLJFJH_13625 0.68 -1.0
2,869,865 - OLJFJH_13625 0.68 -0.4
2,869,871 + OLJFJH_13625 0.69 -2.7
2,869,871 + OLJFJH_13625 0.69 -0.2
2,869,897 - OLJFJH_13625 0.70 +1.1
2,869,960 + OLJFJH_13625 0.73 +0.5
2,869,961 - OLJFJH_13625 0.73 -1.5
2,870,105 + OLJFJH_13625 0.81 +0.6
2,870,188 + OLJFJH_13625 0.85 -3.0
2,870,320 + -3.1
2,870,321 - +1.4
2,870,334 + -0.3
2,870,334 + +0.2
2,870,351 + -0.7
2,870,482 + -2.2
2,870,508 + -3.9
2,870,512 + +1.3
2,870,547 + +1.1
2,870,547 + -0.6
2,870,547 + -2.2
2,870,574 - -3.1
2,870,611 + -0.0
2,870,613 + +0.5
2,870,613 + +0.1
2,870,614 - -0.3
2,870,730 + -2.0
2,871,045 + OLJFJH_13630 0.34 +2.1
2,871,154 - OLJFJH_13630 0.46 -0.6
2,871,195 - OLJFJH_13630 0.50 -1.7
2,871,210 - OLJFJH_13630 0.52 -0.0
2,871,285 + OLJFJH_13630 0.60 +0.0
2,871,346 + OLJFJH_13630 0.67 +0.5
2,871,358 + OLJFJH_13630 0.68 +0.4
2,871,359 - OLJFJH_13630 0.68 -0.6
2,871,423 - OLJFJH_13630 0.75 +0.3
2,871,423 - OLJFJH_13630 0.75 +1.2
2,871,449 + OLJFJH_13630 0.78 +0.0
2,871,465 + OLJFJH_13630 0.80 -0.7

Or see this region's nucleotide sequence