Strain Fitness in Erwinia amylovora T8 around OLJFJH_13615

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_13610 and OLJFJH_13615 are separated by 153 nucleotidesOLJFJH_13615 and OLJFJH_13620 are separated by 153 nucleotidesOLJFJH_13620 and OLJFJH_13625 overlap by 7 nucleotides OLJFJH_13610: OLJFJH_13610 - DUF2931 domain-containing protein, at 2,866,297 to 2,866,956 _13610 OLJFJH_13615: OLJFJH_13615 - DUF2931 domain-containing protein, at 2,867,110 to 2,867,769 _13615 OLJFJH_13620: OLJFJH_13620 - DUF2931 domain-containing protein, at 2,867,923 to 2,868,582 _13620 OLJFJH_13625: OLJFJH_13625 - type VI secretion protein, at 2,868,576 to 2,870,465 _13625 Position (kb) 2867 2868Strain fitness (log2 ratio) -2 -1 0 1at 2866.144 kb on - strandat 2866.172 kb on + strandat 2866.172 kb on + strandat 2866.172 kb on + strandat 2866.173 kb on - strandat 2866.295 kb on - strandat 2866.356 kb on - strandat 2867.535 kb on + strand, within OLJFJH_13615at 2867.535 kb on + strand, within OLJFJH_13615at 2867.544 kb on + strand, within OLJFJH_13615at 2867.784 kb on - strandat 2868.644 kb on + strandat 2868.728 kb on + strandat 2868.728 kb on + strandat 2868.729 kb on - strandat 2868.729 kb on - strandat 2868.730 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
remove
2,866,144 - -1.5
2,866,172 + -1.0
2,866,172 + +1.0
2,866,172 + +0.9
2,866,173 - -2.3
2,866,295 - -0.0
2,866,356 - +0.5
2,867,535 + OLJFJH_13615 0.64 +1.7
2,867,535 + OLJFJH_13615 0.64 +1.4
2,867,544 + OLJFJH_13615 0.66 -0.6
2,867,784 - -0.8
2,868,644 + -2.7
2,868,728 + -0.3
2,868,728 + -0.9
2,868,729 - -0.8
2,868,729 - -0.7
2,868,730 + +0.6

Or see this region's nucleotide sequence