Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_12860 and OLJFJH_12865 are separated by 82 nucleotides OLJFJH_12865 and OLJFJH_12870 overlap by 8 nucleotides OLJFJH_12870 and OLJFJH_12875 are separated by 77 nucleotides
OLJFJH_12860: OLJFJH_12860 - Holliday junction branch migration DNA helicase RuvB, at 2,708,975 to 2,709,979
_12860
OLJFJH_12865: OLJFJH_12865 - zinc ABC transporter permease subunit ZnuB, at 2,710,062 to 2,710,847
_12865
OLJFJH_12870: OLJFJH_12870 - zinc ABC transporter ATP-binding protein ZnuC, at 2,710,840 to 2,711,598
_12870
OLJFJH_12875: OLJFJH_12875 - zinc ABC transporter substrate-binding protein ZnuA, at 2,711,676 to 2,712,635
_12875
Position (kb)
2710
2711
2712 Strain fitness (log2 ratio)
-1
0
1
2 at 2709.884 kb on + strand at 2710.012 kb on - strand at 2710.032 kb on + strand at 2710.032 kb on + strand at 2710.033 kb on - strand at 2710.063 kb on + strand at 2710.063 kb on + strand at 2710.086 kb on - strand at 2710.086 kb on - strand at 2710.089 kb on + strand at 2710.089 kb on + strand at 2710.089 kb on + strand at 2710.855 kb on - strand at 2710.873 kb on - strand at 2710.960 kb on - strand, within OLJFJH_12870 at 2711.599 kb on - strand at 2711.676 kb on - strand at 2711.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 2,709,884 + +0.3 2,710,012 - +0.4 2,710,032 + -0.6 2,710,032 + -0.6 2,710,033 - -1.6 2,710,063 + -0.5 2,710,063 + -0.1 2,710,086 - -0.8 2,710,086 - -1.5 2,710,089 + -1.6 2,710,089 + -0.6 2,710,089 + -0.5 2,710,855 - +0.9 2,710,873 - -0.3 2,710,960 - OLJFJH_12870 0.16 +1.3 2,711,599 - +1.7 2,711,676 - +2.2 2,711,680 + +0.4
Or see this region's nucleotide sequence