Strain Fitness in Erwinia amylovora T8 around OLJFJH_12870

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12860 and OLJFJH_12865 are separated by 82 nucleotidesOLJFJH_12865 and OLJFJH_12870 overlap by 8 nucleotidesOLJFJH_12870 and OLJFJH_12875 are separated by 77 nucleotides OLJFJH_12860: OLJFJH_12860 - Holliday junction branch migration DNA helicase RuvB, at 2,708,975 to 2,709,979 _12860 OLJFJH_12865: OLJFJH_12865 - zinc ABC transporter permease subunit ZnuB, at 2,710,062 to 2,710,847 _12865 OLJFJH_12870: OLJFJH_12870 - zinc ABC transporter ATP-binding protein ZnuC, at 2,710,840 to 2,711,598 _12870 OLJFJH_12875: OLJFJH_12875 - zinc ABC transporter substrate-binding protein ZnuA, at 2,711,676 to 2,712,635 _12875 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -1 0 1 2at 2709.884 kb on + strandat 2710.012 kb on - strandat 2710.032 kb on + strandat 2710.032 kb on + strandat 2710.033 kb on - strandat 2710.063 kb on + strandat 2710.063 kb on + strandat 2710.086 kb on - strandat 2710.086 kb on - strandat 2710.089 kb on + strandat 2710.089 kb on + strandat 2710.089 kb on + strandat 2710.855 kb on - strandat 2710.873 kb on - strandat 2710.960 kb on - strand, within OLJFJH_12870at 2711.599 kb on - strandat 2711.676 kb on - strandat 2711.680 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,709,884 + +0.3
2,710,012 - +0.4
2,710,032 + -0.6
2,710,032 + -0.6
2,710,033 - -1.6
2,710,063 + -0.5
2,710,063 + -0.1
2,710,086 - -0.8
2,710,086 - -1.5
2,710,089 + -1.6
2,710,089 + -0.6
2,710,089 + -0.5
2,710,855 - +0.9
2,710,873 - -0.3
2,710,960 - OLJFJH_12870 0.16 +1.3
2,711,599 - +1.7
2,711,676 - +2.2
2,711,680 + +0.4

Or see this region's nucleotide sequence