Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_12120 and OLJFJH_12125 overlap by 4 nucleotides OLJFJH_12125 and OLJFJH_12130 are separated by 13 nucleotides OLJFJH_12130 and OLJFJH_12135 are separated by 50 nucleotides
OLJFJH_12120: OLJFJH_12120 - UDP-galactopyranose mutase, at 2,552,472 to 2,553,626
_12120
OLJFJH_12125: OLJFJH_12125 - glycosyl transferase, at 2,553,623 to 2,554,519
_12125
OLJFJH_12130: OLJFJH_12130 - glycosyltransferase family 1 protein, at 2,554,533 to 2,555,660
_12130
OLJFJH_12135: OLJFJH_12135 - CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase, at 2,555,711 to 2,557,159
_12135
Position (kb)
2554
2555
2556 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2553.651 kb on - strand at 2553.651 kb on - strand at 2553.669 kb on + strand at 2553.768 kb on + strand, within OLJFJH_12125 at 2553.771 kb on + strand, within OLJFJH_12125 at 2553.860 kb on - strand, within OLJFJH_12125 at 2553.884 kb on + strand, within OLJFJH_12125 at 2553.884 kb on + strand, within OLJFJH_12125 at 2555.234 kb on + strand, within OLJFJH_12130 at 2555.272 kb on + strand, within OLJFJH_12130 at 2555.563 kb on + strand at 2555.780 kb on + strand at 2556.164 kb on - strand, within OLJFJH_12135
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 2,553,651 - +2.5 2,553,651 - -0.5 2,553,669 + +2.2 2,553,768 + OLJFJH_12125 0.16 +0.6 2,553,771 + OLJFJH_12125 0.16 +3.1 2,553,860 - OLJFJH_12125 0.26 +0.2 2,553,884 + OLJFJH_12125 0.29 +0.9 2,553,884 + OLJFJH_12125 0.29 -1.0 2,555,234 + OLJFJH_12130 0.62 +2.9 2,555,272 + OLJFJH_12130 0.66 +0.4 2,555,563 + -0.4 2,555,780 + +1.0 2,556,164 - OLJFJH_12135 0.31 +1.6
Or see this region's nucleotide sequence