Strain Fitness in Erwinia amylovora T8 around OLJFJH_12100

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12090 and OLJFJH_12095 are separated by 1 nucleotidesOLJFJH_12095 and OLJFJH_12100 are separated by 119 nucleotidesOLJFJH_12100 and OLJFJH_12105 are separated by 72 nucleotidesOLJFJH_12105 and OLJFJH_12110 overlap by 1 nucleotides OLJFJH_12090: OLJFJH_12090 - dTDP-glucose 4 6-dehydratase, at 2,545,964 to 2,547,040 _12090 OLJFJH_12095: OLJFJH_12095 - glucose-1-phosphate thymidylyltransferase RfbA, at 2,547,042 to 2,547,908 _12095 OLJFJH_12100: OLJFJH_12100 - NAD-dependent dehydratase, at 2,548,028 to 2,548,963 _12100 OLJFJH_12105: OLJFJH_12105 - ABC transporter permease, at 2,549,036 to 2,549,803 _12105 OLJFJH_12110: OLJFJH_12110 - sugar ABC transporter ATP-binding protein, at 2,549,803 to 2,550,543 _12110 Position (kb) 2548 2549Strain fitness (log2 ratio) -2 -1 0 1 2at 2547.054 kb on - strandat 2547.145 kb on - strand, within OLJFJH_12095at 2547.201 kb on - strand, within OLJFJH_12095at 2547.253 kb on + strand, within OLJFJH_12095at 2547.368 kb on + strand, within OLJFJH_12095at 2547.410 kb on - strand, within OLJFJH_12095at 2547.657 kb on - strand, within OLJFJH_12095at 2548.000 kb on - strandat 2548.537 kb on - strand, within OLJFJH_12100at 2548.651 kb on + strand, within OLJFJH_12100at 2548.717 kb on + strand, within OLJFJH_12100at 2548.926 kb on + strandat 2548.926 kb on + strandat 2549.403 kb on + strand, within OLJFJH_12105at 2549.539 kb on - strand, within OLJFJH_12105at 2549.577 kb on - strand, within OLJFJH_12105at 2549.683 kb on + strand, within OLJFJH_12105at 2549.947 kb on - strand, within OLJFJH_12110

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,547,054 - -0.4
2,547,145 - OLJFJH_12095 0.12 -1.9
2,547,201 - OLJFJH_12095 0.18 +0.9
2,547,253 + OLJFJH_12095 0.24 -0.2
2,547,368 + OLJFJH_12095 0.38 +0.4
2,547,410 - OLJFJH_12095 0.42 +0.6
2,547,657 - OLJFJH_12095 0.71 -0.2
2,548,000 - +1.1
2,548,537 - OLJFJH_12100 0.54 -1.5
2,548,651 + OLJFJH_12100 0.67 +1.8
2,548,717 + OLJFJH_12100 0.74 +0.7
2,548,926 + -0.3
2,548,926 + -0.5
2,549,403 + OLJFJH_12105 0.48 +1.6
2,549,539 - OLJFJH_12105 0.65 +1.6
2,549,577 - OLJFJH_12105 0.70 -0.5
2,549,683 + OLJFJH_12105 0.84 +0.9
2,549,947 - OLJFJH_12110 0.19 +0.6

Or see this region's nucleotide sequence