Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_12090 and OLJFJH_12095 are separated by 1 nucleotides OLJFJH_12095 and OLJFJH_12100 are separated by 119 nucleotides OLJFJH_12100 and OLJFJH_12105 are separated by 72 nucleotides OLJFJH_12105 and OLJFJH_12110 overlap by 1 nucleotides
OLJFJH_12090: OLJFJH_12090 - dTDP-glucose 4 6-dehydratase, at 2,545,964 to 2,547,040
_12090
OLJFJH_12095: OLJFJH_12095 - glucose-1-phosphate thymidylyltransferase RfbA, at 2,547,042 to 2,547,908
_12095
OLJFJH_12100: OLJFJH_12100 - NAD-dependent dehydratase, at 2,548,028 to 2,548,963
_12100
OLJFJH_12105: OLJFJH_12105 - ABC transporter permease, at 2,549,036 to 2,549,803
_12105
OLJFJH_12110: OLJFJH_12110 - sugar ABC transporter ATP-binding protein, at 2,549,803 to 2,550,543
_12110
Position (kb)
2548
2549 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2547.054 kb on - strand at 2547.145 kb on - strand, within OLJFJH_12095 at 2547.201 kb on - strand, within OLJFJH_12095 at 2547.253 kb on + strand, within OLJFJH_12095 at 2547.368 kb on + strand, within OLJFJH_12095 at 2547.410 kb on - strand, within OLJFJH_12095 at 2547.657 kb on - strand, within OLJFJH_12095 at 2548.000 kb on - strand at 2548.537 kb on - strand, within OLJFJH_12100 at 2548.651 kb on + strand, within OLJFJH_12100 at 2548.717 kb on + strand, within OLJFJH_12100 at 2548.926 kb on + strand at 2548.926 kb on + strand at 2549.403 kb on + strand, within OLJFJH_12105 at 2549.539 kb on - strand, within OLJFJH_12105 at 2549.577 kb on - strand, within OLJFJH_12105 at 2549.683 kb on + strand, within OLJFJH_12105 at 2549.947 kb on - strand, within OLJFJH_12110
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 2,547,054 - -0.4 2,547,145 - OLJFJH_12095 0.12 -1.9 2,547,201 - OLJFJH_12095 0.18 +0.9 2,547,253 + OLJFJH_12095 0.24 -0.2 2,547,368 + OLJFJH_12095 0.38 +0.4 2,547,410 - OLJFJH_12095 0.42 +0.6 2,547,657 - OLJFJH_12095 0.71 -0.2 2,548,000 - +1.1 2,548,537 - OLJFJH_12100 0.54 -1.5 2,548,651 + OLJFJH_12100 0.67 +1.8 2,548,717 + OLJFJH_12100 0.74 +0.7 2,548,926 + -0.3 2,548,926 + -0.5 2,549,403 + OLJFJH_12105 0.48 +1.6 2,549,539 - OLJFJH_12105 0.65 +1.6 2,549,577 - OLJFJH_12105 0.70 -0.5 2,549,683 + OLJFJH_12105 0.84 +0.9 2,549,947 - OLJFJH_12110 0.19 +0.6
Or see this region's nucleotide sequence