Strain Fitness in Erwinia amylovora T8 around OLJFJH_11380

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11375 and OLJFJH_11380 are separated by 491 nucleotidesOLJFJH_11380 and OLJFJH_11385 are separated by 601 nucleotides OLJFJH_11375: OLJFJH_11375 - sugar phosphatase, at 2,368,003 to 2,368,662 _11375 OLJFJH_11380: OLJFJH_11380 - hypothetical protein, at 2,369,154 to 2,369,849 _11380 OLJFJH_11385: OLJFJH_11385 - ADP-ribosyltransferase exoenzyme, at 2,370,451 to 2,372,997 _11385 Position (kb) 2369 2370Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2368.167 kb on + strand, within OLJFJH_11375at 2368.237 kb on - strand, within OLJFJH_11375at 2368.268 kb on + strand, within OLJFJH_11375at 2368.295 kb on + strand, within OLJFJH_11375at 2368.296 kb on - strand, within OLJFJH_11375at 2368.296 kb on - strand, within OLJFJH_11375at 2368.478 kb on + strand, within OLJFJH_11375at 2368.644 kb on + strandat 2368.645 kb on - strandat 2368.648 kb on + strandat 2368.788 kb on + strandat 2368.864 kb on - strandat 2368.879 kb on + strandat 2368.884 kb on - strandat 2368.886 kb on - strandat 2369.412 kb on + strand, within OLJFJH_11380at 2369.595 kb on - strand, within OLJFJH_11380at 2369.596 kb on + strand, within OLJFJH_11380at 2369.799 kb on + strandat 2369.805 kb on - strandat 2369.868 kb on - strandat 2370.388 kb on - strandat 2370.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,368,167 + OLJFJH_11375 0.25 -2.4
2,368,237 - OLJFJH_11375 0.35 -2.3
2,368,268 + OLJFJH_11375 0.40 -1.4
2,368,295 + OLJFJH_11375 0.44 -0.1
2,368,296 - OLJFJH_11375 0.44 -1.0
2,368,296 - OLJFJH_11375 0.44 -0.5
2,368,478 + OLJFJH_11375 0.72 -0.4
2,368,644 + +2.4
2,368,645 - -0.1
2,368,648 + -2.3
2,368,788 + -1.7
2,368,864 - +0.8
2,368,879 + -1.5
2,368,884 - +0.1
2,368,886 - +0.0
2,369,412 + OLJFJH_11380 0.37 +1.4
2,369,595 - OLJFJH_11380 0.63 +2.9
2,369,596 + OLJFJH_11380 0.64 -2.2
2,369,799 + -2.4
2,369,805 - -3.4
2,369,868 - +1.4
2,370,388 - -0.9
2,370,506 + +0.1

Or see this region's nucleotide sequence