Strain Fitness in Erwinia amylovora T8 around OLJFJH_10730
Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 |
---|---|---|---|---|---|
remove | |||||
2,241,022 | + | OLJFJH_10730 | 0.15 | +0.3 | |
2,241,022 | + | OLJFJH_10730 | 0.15 | -0.4 | |
2,241,023 | - | OLJFJH_10730 | 0.15 | +0.5 | |
2,241,081 | - | OLJFJH_10730 | 0.30 | -0.2 | |
2,241,103 | + | OLJFJH_10730 | 0.36 | +2.5 | |
2,241,106 | + | OLJFJH_10730 | 0.36 | +0.9 | |
2,241,204 | - | OLJFJH_10730 | 0.62 | +0.7 | |
2,241,350 | - | -0.3 | |||
2,241,353 | + | -2.9 | |||
2,241,354 | - | -1.3 | |||
2,241,354 | - | -1.3 | |||
2,241,366 | - | +0.7 | |||
2,241,376 | - | -0.8 | |||
2,241,420 | + | +1.1 | |||
2,241,422 | + | -1.0 | |||
2,241,422 | + | +1.0 | |||
2,241,456 | + | -0.4 | |||
2,241,493 | + | -0.3 | |||
2,241,493 | + | +1.2 | |||
2,241,513 | + | +0.8 | |||
2,241,514 | - | -0.9 | |||
2,241,577 | - | -1.5 | |||
2,241,670 | + | -0.1 | |||
2,241,892 | + | -1.5 | |||
2,242,004 | - | -2.0 | |||
2,242,109 | + | +1.8 | |||
2,242,176 | + | +0.6 | |||
2,242,246 | + | -1.0 | |||
2,242,247 | - | +0.9 | |||
2,242,249 | - | -3.4 | |||
2,242,334 | + | -0.7 | |||
2,242,335 | - | -0.3 | |||
2,242,335 | - | +0.6 | |||
2,242,335 | - | -1.2 |
Or see this region's nucleotide sequence