Strain Fitness in Erwinia amylovora T8 around OLJFJH_10730

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10725 and OLJFJH_10730 are separated by 2 nucleotidesOLJFJH_10730 and OLJFJH_10735 are separated by 978 nucleotides OLJFJH_10725: OLJFJH_10725 - succinyl-diaminopimelate desuccinylase, at 2,239,836 to 2,240,963 _10725 OLJFJH_10730: OLJFJH_10730 - ArsC family reductase, at 2,240,966 to 2,241,349 _10730 OLJFJH_10735: OLJFJH_10735 - hypothetical protein, at 2,242,328 to 2,242,522 _10735 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2241.022 kb on + strand, within OLJFJH_10730at 2241.022 kb on + strand, within OLJFJH_10730at 2241.023 kb on - strand, within OLJFJH_10730at 2241.081 kb on - strand, within OLJFJH_10730at 2241.103 kb on + strand, within OLJFJH_10730at 2241.106 kb on + strand, within OLJFJH_10730at 2241.204 kb on - strand, within OLJFJH_10730at 2241.350 kb on - strandat 2241.353 kb on + strandat 2241.354 kb on - strandat 2241.354 kb on - strandat 2241.366 kb on - strandat 2241.376 kb on - strandat 2241.420 kb on + strandat 2241.422 kb on + strandat 2241.422 kb on + strandat 2241.456 kb on + strandat 2241.493 kb on + strandat 2241.493 kb on + strandat 2241.513 kb on + strandat 2241.514 kb on - strandat 2241.577 kb on - strandat 2241.670 kb on + strandat 2241.892 kb on + strandat 2242.004 kb on - strandat 2242.109 kb on + strandat 2242.176 kb on + strandat 2242.246 kb on + strandat 2242.247 kb on - strandat 2242.249 kb on - strandat 2242.334 kb on + strandat 2242.335 kb on - strandat 2242.335 kb on - strandat 2242.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,241,022 + OLJFJH_10730 0.15 +0.3
2,241,022 + OLJFJH_10730 0.15 -0.4
2,241,023 - OLJFJH_10730 0.15 +0.5
2,241,081 - OLJFJH_10730 0.30 -0.2
2,241,103 + OLJFJH_10730 0.36 +2.5
2,241,106 + OLJFJH_10730 0.36 +0.9
2,241,204 - OLJFJH_10730 0.62 +0.7
2,241,350 - -0.3
2,241,353 + -2.9
2,241,354 - -1.3
2,241,354 - -1.3
2,241,366 - +0.7
2,241,376 - -0.8
2,241,420 + +1.1
2,241,422 + -1.0
2,241,422 + +1.0
2,241,456 + -0.4
2,241,493 + -0.3
2,241,493 + +1.2
2,241,513 + +0.8
2,241,514 - -0.9
2,241,577 - -1.5
2,241,670 + -0.1
2,241,892 + -1.5
2,242,004 - -2.0
2,242,109 + +1.8
2,242,176 + +0.6
2,242,246 + -1.0
2,242,247 - +0.9
2,242,249 - -3.4
2,242,334 + -0.7
2,242,335 - -0.3
2,242,335 - +0.6
2,242,335 - -1.2

Or see this region's nucleotide sequence