Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_10680 and OLJFJH_10685 are separated by 222 nucleotides OLJFJH_10685 and OLJFJH_10690 are separated by 8 nucleotides OLJFJH_10690 and OLJFJH_10695 are separated by 178 nucleotides OLJFJH_10695 and OLJFJH_10700 are separated by 4 nucleotides
OLJFJH_10680: OLJFJH_10680 - Uncharacterized conserved protein RhaS contains 28 RHS repeats, at 2,209,050 to 2,210,435
_10680
OLJFJH_10685: OLJFJH_10685 - Colicin immunity protein/pyocin immunity protein, at 2,210,658 to 2,210,855
_10685
OLJFJH_10690: OLJFJH_10690 - RHS domain-containing protein, at 2,210,864 to 2,212,357
_10690
OLJFJH_10695: OLJFJH_10695 - SMI1/KNR4 family protein, at 2,212,536 to 2,212,988
_10695
OLJFJH_10700: OLJFJH_10700 - type IV secretion protein Rhs, at 2,212,993 to 2,217,252
_10700
Position (kb)
2210
2211
2212
2213 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2210.616 kb on - strand at 2210.654 kb on - strand at 2210.713 kb on - strand, within OLJFJH_10685 at 2210.835 kb on + strand, within OLJFJH_10685 at 2210.982 kb on + strand at 2210.982 kb on + strand at 2211.096 kb on - strand, within OLJFJH_10690 at 2211.137 kb on - strand, within OLJFJH_10690 at 2211.230 kb on - strand, within OLJFJH_10690 at 2211.230 kb on - strand, within OLJFJH_10690 at 2211.256 kb on + strand, within OLJFJH_10690 at 2211.256 kb on + strand, within OLJFJH_10690 at 2212.533 kb on + strand at 2212.534 kb on - strand at 2213.019 kb on + strand at 2213.038 kb on + strand at 2213.039 kb on - strand at 2213.063 kb on + strand at 2213.092 kb on - strand at 2213.194 kb on + strand at 2213.256 kb on + strand at 2213.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 2,210,616 - -1.1 2,210,654 - -2.5 2,210,713 - OLJFJH_10685 0.28 -3.0 2,210,835 + OLJFJH_10685 0.89 -1.7 2,210,982 + +1.0 2,210,982 + -0.6 2,211,096 - OLJFJH_10690 0.16 +1.1 2,211,137 - OLJFJH_10690 0.18 +1.0 2,211,230 - OLJFJH_10690 0.24 +1.0 2,211,230 - OLJFJH_10690 0.24 -0.3 2,211,256 + OLJFJH_10690 0.26 +0.0 2,211,256 + OLJFJH_10690 0.26 +1.4 2,212,533 + -0.2 2,212,534 - -1.6 2,213,019 + -1.8 2,213,038 + +0.9 2,213,039 - -0.7 2,213,063 + -2.2 2,213,092 - -0.8 2,213,194 + -0.7 2,213,256 + -2.6 2,213,291 + +0.9
Or see this region's nucleotide sequence