Strain Fitness in Erwinia amylovora T8 around OLJFJH_10550

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10545 and OLJFJH_10550 are separated by 596 nucleotidesOLJFJH_10550 and OLJFJH_10555 overlap by 11 nucleotidesOLJFJH_10555 and OLJFJH_10560 are separated by 93 nucleotides OLJFJH_10545: OLJFJH_10545 - magnesium transporter, at 2,178,390 to 2,179,826 _10545 OLJFJH_10550: OLJFJH_10550 - EAL domain c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 2,180,423 to 2,182,672 _10550 OLJFJH_10555: OLJFJH_10555 - tellurite resistance methyltransferase TehB, at 2,182,662 to 2,183,294 _10555 OLJFJH_10560: OLJFJH_10560 - exopolyphosphatase, at 2,183,388 to 2,184,914 _10560 Position (kb) 2180 2181 2182 2183Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 2179.432 kb on + strand, within OLJFJH_10545at 2179.432 kb on + strand, within OLJFJH_10545at 2179.433 kb on - strand, within OLJFJH_10545at 2179.433 kb on - strand, within OLJFJH_10545at 2179.436 kb on + strand, within OLJFJH_10545at 2179.572 kb on + strand, within OLJFJH_10545at 2179.572 kb on + strand, within OLJFJH_10545at 2179.573 kb on - strand, within OLJFJH_10545at 2179.758 kb on + strandat 2179.853 kb on - strandat 2179.866 kb on - strandat 2180.017 kb on + strandat 2180.017 kb on + strandat 2180.017 kb on + strandat 2180.018 kb on - strandat 2180.018 kb on - strandat 2180.018 kb on - strandat 2180.018 kb on - strandat 2180.018 kb on - strandat 2180.036 kb on - strandat 2180.039 kb on - strandat 2180.300 kb on + strandat 2180.367 kb on + strandat 2180.375 kb on + strandat 2180.411 kb on - strandat 2180.453 kb on - strandat 2180.546 kb on + strandat 2180.552 kb on + strandat 2180.553 kb on - strandat 2180.559 kb on + strandat 2180.559 kb on + strandat 2180.560 kb on - strandat 2180.560 kb on - strandat 2180.560 kb on - strandat 2180.560 kb on - strandat 2180.561 kb on + strandat 2180.561 kb on + strandat 2180.561 kb on + strandat 2180.561 kb on + strandat 2180.561 kb on + strandat 2180.562 kb on - strandat 2180.562 kb on - strandat 2180.562 kb on - strandat 2180.562 kb on - strandat 2180.562 kb on - strandat 2180.562 kb on - strandat 2180.796 kb on + strand, within OLJFJH_10550at 2180.833 kb on + strand, within OLJFJH_10550at 2180.881 kb on + strand, within OLJFJH_10550at 2180.882 kb on - strand, within OLJFJH_10550at 2180.882 kb on - strand, within OLJFJH_10550at 2180.915 kb on - strand, within OLJFJH_10550at 2181.085 kb on - strand, within OLJFJH_10550at 2181.099 kb on + strand, within OLJFJH_10550at 2181.105 kb on + strand, within OLJFJH_10550at 2181.106 kb on - strand, within OLJFJH_10550at 2181.187 kb on - strand, within OLJFJH_10550at 2181.275 kb on - strand, within OLJFJH_10550at 2181.301 kb on + strand, within OLJFJH_10550at 2181.302 kb on - strand, within OLJFJH_10550at 2181.302 kb on - strand, within OLJFJH_10550at 2181.323 kb on + strand, within OLJFJH_10550at 2181.439 kb on + strand, within OLJFJH_10550at 2181.440 kb on - strand, within OLJFJH_10550at 2181.551 kb on - strand, within OLJFJH_10550at 2181.551 kb on - strand, within OLJFJH_10550at 2181.566 kb on - strand, within OLJFJH_10550at 2181.574 kb on + strand, within OLJFJH_10550at 2181.575 kb on - strand, within OLJFJH_10550at 2181.579 kb on - strand, within OLJFJH_10550at 2181.597 kb on - strand, within OLJFJH_10550at 2181.612 kb on + strand, within OLJFJH_10550at 2181.615 kb on - strand, within OLJFJH_10550at 2181.615 kb on - strand, within OLJFJH_10550at 2181.643 kb on - strand, within OLJFJH_10550at 2181.673 kb on + strand, within OLJFJH_10550at 2181.673 kb on + strand, within OLJFJH_10550at 2181.673 kb on + strand, within OLJFJH_10550at 2181.755 kb on + strand, within OLJFJH_10550at 2181.760 kb on + strand, within OLJFJH_10550at 2181.890 kb on - strand, within OLJFJH_10550at 2181.920 kb on - strand, within OLJFJH_10550at 2181.978 kb on + strand, within OLJFJH_10550at 2181.992 kb on + strand, within OLJFJH_10550at 2181.996 kb on - strand, within OLJFJH_10550at 2181.996 kb on - strand, within OLJFJH_10550at 2182.034 kb on + strand, within OLJFJH_10550at 2182.034 kb on + strand, within OLJFJH_10550at 2182.035 kb on - strand, within OLJFJH_10550at 2182.037 kb on - strand, within OLJFJH_10550at 2182.037 kb on - strand, within OLJFJH_10550at 2182.126 kb on + strand, within OLJFJH_10550at 2182.265 kb on - strand, within OLJFJH_10550at 2182.320 kb on + strand, within OLJFJH_10550at 2182.415 kb on - strand, within OLJFJH_10550at 2182.415 kb on - strand, within OLJFJH_10550at 2182.415 kb on - strand, within OLJFJH_10550at 2182.444 kb on + strand, within OLJFJH_10550at 2182.445 kb on - strand, within OLJFJH_10550at 2182.445 kb on - strand, within OLJFJH_10550at 2182.448 kb on - strandat 2182.478 kb on - strandat 2182.766 kb on - strand, within OLJFJH_10555at 2182.793 kb on - strand, within OLJFJH_10555at 2182.793 kb on - strand, within OLJFJH_10555at 2182.793 kb on - strand, within OLJFJH_10555at 2182.799 kb on + strand, within OLJFJH_10555at 2182.800 kb on - strand, within OLJFJH_10555at 2182.815 kb on - strand, within OLJFJH_10555at 2182.847 kb on - strand, within OLJFJH_10555at 2182.862 kb on + strand, within OLJFJH_10555at 2182.863 kb on - strand, within OLJFJH_10555at 2182.882 kb on + strand, within OLJFJH_10555at 2182.882 kb on + strand, within OLJFJH_10555at 2182.882 kb on + strand, within OLJFJH_10555at 2182.883 kb on - strand, within OLJFJH_10555at 2182.883 kb on - strand, within OLJFJH_10555at 2182.883 kb on - strand, within OLJFJH_10555at 2182.979 kb on + strand, within OLJFJH_10555at 2182.980 kb on - strand, within OLJFJH_10555at 2182.980 kb on - strand, within OLJFJH_10555at 2182.980 kb on - strand, within OLJFJH_10555at 2182.981 kb on + strand, within OLJFJH_10555at 2182.981 kb on + strand, within OLJFJH_10555at 2182.982 kb on - strand, within OLJFJH_10555at 2182.982 kb on - strand, within OLJFJH_10555at 2182.982 kb on - strand, within OLJFJH_10555at 2183.003 kb on + strand, within OLJFJH_10555at 2183.054 kb on + strand, within OLJFJH_10555at 2183.087 kb on + strand, within OLJFJH_10555at 2183.091 kb on - strand, within OLJFJH_10555at 2183.124 kb on - strand, within OLJFJH_10555at 2183.183 kb on + strand, within OLJFJH_10555at 2183.184 kb on - strand, within OLJFJH_10555at 2183.368 kb on + strandat 2183.470 kb on - strandat 2183.488 kb on + strandat 2183.516 kb on + strandat 2183.531 kb on - strandat 2183.577 kb on - strand, within OLJFJH_10560at 2183.652 kb on - strand, within OLJFJH_10560at 2183.658 kb on + strand, within OLJFJH_10560at 2183.664 kb on + strand, within OLJFJH_10560

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,179,432 + OLJFJH_10545 0.73 -0.4
2,179,432 + OLJFJH_10545 0.73 +0.5
2,179,433 - OLJFJH_10545 0.73 -3.2
2,179,433 - OLJFJH_10545 0.73 +0.7
2,179,436 + OLJFJH_10545 0.73 -1.2
2,179,572 + OLJFJH_10545 0.82 +2.0
2,179,572 + OLJFJH_10545 0.82 -0.7
2,179,573 - OLJFJH_10545 0.82 -2.1
2,179,758 + -1.1
2,179,853 - +3.3
2,179,866 - +0.1
2,180,017 + +0.6
2,180,017 + -0.5
2,180,017 + +0.4
2,180,018 - +0.3
2,180,018 - -0.8
2,180,018 - -0.1
2,180,018 - +0.0
2,180,018 - -0.3
2,180,036 - +2.3
2,180,039 - +0.6
2,180,300 + -0.3
2,180,367 + +0.1
2,180,375 + -2.1
2,180,411 - +1.5
2,180,453 - -0.2
2,180,546 + -1.3
2,180,552 + -2.5
2,180,553 - -1.6
2,180,559 + +0.7
2,180,559 + +1.1
2,180,560 - -0.6
2,180,560 - +0.4
2,180,560 - +1.3
2,180,560 - +0.5
2,180,561 + -0.1
2,180,561 + +0.3
2,180,561 + +0.6
2,180,561 + +2.9
2,180,561 + +0.2
2,180,562 - +0.4
2,180,562 - +0.4
2,180,562 - +0.4
2,180,562 - -0.0
2,180,562 - -1.2
2,180,562 - -0.2
2,180,796 + OLJFJH_10550 0.17 +2.2
2,180,833 + OLJFJH_10550 0.18 +0.2
2,180,881 + OLJFJH_10550 0.20 +1.8
2,180,882 - OLJFJH_10550 0.20 -3.5
2,180,882 - OLJFJH_10550 0.20 +0.8
2,180,915 - OLJFJH_10550 0.22 -0.8
2,181,085 - OLJFJH_10550 0.29 -1.6
2,181,099 + OLJFJH_10550 0.30 +1.3
2,181,105 + OLJFJH_10550 0.30 -1.7
2,181,106 - OLJFJH_10550 0.30 -0.1
2,181,187 - OLJFJH_10550 0.34 -0.2
2,181,275 - OLJFJH_10550 0.38 +0.3
2,181,301 + OLJFJH_10550 0.39 +2.1
2,181,302 - OLJFJH_10550 0.39 -1.5
2,181,302 - OLJFJH_10550 0.39 -2.1
2,181,323 + OLJFJH_10550 0.40 +0.6
2,181,439 + OLJFJH_10550 0.45 -1.2
2,181,440 - OLJFJH_10550 0.45 +0.7
2,181,551 - OLJFJH_10550 0.50 -0.5
2,181,551 - OLJFJH_10550 0.50 -0.6
2,181,566 - OLJFJH_10550 0.51 -3.1
2,181,574 + OLJFJH_10550 0.51 +11.8
2,181,575 - OLJFJH_10550 0.51 -0.9
2,181,579 - OLJFJH_10550 0.51 -1.5
2,181,597 - OLJFJH_10550 0.52 +0.6
2,181,612 + OLJFJH_10550 0.53 +0.6
2,181,615 - OLJFJH_10550 0.53 +0.3
2,181,615 - OLJFJH_10550 0.53 +2.4
2,181,643 - OLJFJH_10550 0.54 -3.4
2,181,673 + OLJFJH_10550 0.56 -1.8
2,181,673 + OLJFJH_10550 0.56 +0.5
2,181,673 + OLJFJH_10550 0.56 -0.5
2,181,755 + OLJFJH_10550 0.59 -0.4
2,181,760 + OLJFJH_10550 0.59 +1.0
2,181,890 - OLJFJH_10550 0.65 -0.7
2,181,920 - OLJFJH_10550 0.67 -0.0
2,181,978 + OLJFJH_10550 0.69 -1.5
2,181,992 + OLJFJH_10550 0.70 -0.3
2,181,996 - OLJFJH_10550 0.70 -2.2
2,181,996 - OLJFJH_10550 0.70 +0.7
2,182,034 + OLJFJH_10550 0.72 +2.8
2,182,034 + OLJFJH_10550 0.72 +1.9
2,182,035 - OLJFJH_10550 0.72 -3.0
2,182,037 - OLJFJH_10550 0.72 -0.1
2,182,037 - OLJFJH_10550 0.72 -0.1
2,182,126 + OLJFJH_10550 0.76 +0.8
2,182,265 - OLJFJH_10550 0.82 -2.6
2,182,320 + OLJFJH_10550 0.84 +0.6
2,182,415 - OLJFJH_10550 0.89 +2.3
2,182,415 - OLJFJH_10550 0.89 +1.8
2,182,415 - OLJFJH_10550 0.89 +2.6
2,182,444 + OLJFJH_10550 0.90 +0.9
2,182,445 - OLJFJH_10550 0.90 +0.4
2,182,445 - OLJFJH_10550 0.90 -0.1
2,182,448 - -1.8
2,182,478 - -0.5
2,182,766 - OLJFJH_10555 0.16 +0.9
2,182,793 - OLJFJH_10555 0.21 +0.4
2,182,793 - OLJFJH_10555 0.21 -2.4
2,182,793 - OLJFJH_10555 0.21 -1.6
2,182,799 + OLJFJH_10555 0.22 -1.1
2,182,800 - OLJFJH_10555 0.22 +0.0
2,182,815 - OLJFJH_10555 0.24 +0.4
2,182,847 - OLJFJH_10555 0.29 +0.7
2,182,862 + OLJFJH_10555 0.32 -0.3
2,182,863 - OLJFJH_10555 0.32 -0.7
2,182,882 + OLJFJH_10555 0.35 +0.8
2,182,882 + OLJFJH_10555 0.35 -3.9
2,182,882 + OLJFJH_10555 0.35 -0.7
2,182,883 - OLJFJH_10555 0.35 -0.2
2,182,883 - OLJFJH_10555 0.35 -0.6
2,182,883 - OLJFJH_10555 0.35 -0.2
2,182,979 + OLJFJH_10555 0.50 -0.0
2,182,980 - OLJFJH_10555 0.50 +1.9
2,182,980 - OLJFJH_10555 0.50 +0.4
2,182,980 - OLJFJH_10555 0.50 +1.7
2,182,981 + OLJFJH_10555 0.50 -1.7
2,182,981 + OLJFJH_10555 0.50 -0.3
2,182,982 - OLJFJH_10555 0.51 +1.0
2,182,982 - OLJFJH_10555 0.51 -0.4
2,182,982 - OLJFJH_10555 0.51 +0.7
2,183,003 + OLJFJH_10555 0.54 -1.5
2,183,054 + OLJFJH_10555 0.62 -0.0
2,183,087 + OLJFJH_10555 0.67 +1.4
2,183,091 - OLJFJH_10555 0.68 -2.9
2,183,124 - OLJFJH_10555 0.73 +2.6
2,183,183 + OLJFJH_10555 0.82 -0.4
2,183,184 - OLJFJH_10555 0.82 +0.5
2,183,368 + -1.8
2,183,470 - +1.7
2,183,488 + +1.7
2,183,516 + +0.4
2,183,531 - +0.8
2,183,577 - OLJFJH_10560 0.12 +2.6
2,183,652 - OLJFJH_10560 0.17 -0.7
2,183,658 + OLJFJH_10560 0.18 -3.3
2,183,664 + OLJFJH_10560 0.18 -1.3

Or see this region's nucleotide sequence