Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_10255 and OLJFJH_10260 overlap by 4 nucleotides OLJFJH_10260 and OLJFJH_10265 are separated by 5 nucleotides OLJFJH_10265 and OLJFJH_10270 are separated by 74 nucleotides OLJFJH_10270 and OLJFJH_10275 overlap by 1 nucleotides
OLJFJH_10255: OLJFJH_10255 - ribonuclease III, at 2,112,773 to 2,113,453
_10255
OLJFJH_10260: OLJFJH_10260 - GTPase Era, at 2,113,450 to 2,114,355
_10260
OLJFJH_10265: OLJFJH_10265 - DNA repair protein RecO, at 2,114,361 to 2,115,098
_10265
OLJFJH_10270: OLJFJH_10270 - pyridoxine 5'-phosphate synthase, at 2,115,173 to 2,115,904
_10270
OLJFJH_10275: OLJFJH_10275 - Holo-[acyl-carrier-protein] synthase, at 2,115,904 to 2,116,284
_10275
Position (kb)
2114
2115
2116 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2113.435 kb on + strand at 2114.339 kb on - strand at 2114.509 kb on + strand, within OLJFJH_10265 at 2114.619 kb on + strand, within OLJFJH_10265 at 2114.620 kb on - strand, within OLJFJH_10265 at 2114.632 kb on - strand, within OLJFJH_10265 at 2114.850 kb on + strand, within OLJFJH_10265 at 2114.876 kb on + strand, within OLJFJH_10265 at 2114.876 kb on + strand, within OLJFJH_10265 at 2114.876 kb on + strand, within OLJFJH_10265 at 2115.096 kb on + strand at 2115.097 kb on - strand at 2115.097 kb on - strand at 2115.097 kb on - strand at 2115.097 kb on - strand at 2115.101 kb on - strand at 2115.109 kb on + strand at 2115.133 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 2,113,435 + +0.0 2,114,339 - +1.8 2,114,509 + OLJFJH_10265 0.20 +0.2 2,114,619 + OLJFJH_10265 0.35 +1.0 2,114,620 - OLJFJH_10265 0.35 -2.1 2,114,632 - OLJFJH_10265 0.37 -4.0 2,114,850 + OLJFJH_10265 0.66 -0.1 2,114,876 + OLJFJH_10265 0.70 -1.2 2,114,876 + OLJFJH_10265 0.70 +1.8 2,114,876 + OLJFJH_10265 0.70 +3.1 2,115,096 + +1.2 2,115,097 - +0.3 2,115,097 - +0.1 2,115,097 - +1.7 2,115,097 - -1.5 2,115,101 - +2.0 2,115,109 + +1.2 2,115,133 + -0.9
Or see this region's nucleotide sequence