Strain Fitness in Erwinia amylovora T8 around OLJFJH_10265

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10255 and OLJFJH_10260 overlap by 4 nucleotidesOLJFJH_10260 and OLJFJH_10265 are separated by 5 nucleotidesOLJFJH_10265 and OLJFJH_10270 are separated by 74 nucleotidesOLJFJH_10270 and OLJFJH_10275 overlap by 1 nucleotides OLJFJH_10255: OLJFJH_10255 - ribonuclease III, at 2,112,773 to 2,113,453 _10255 OLJFJH_10260: OLJFJH_10260 - GTPase Era, at 2,113,450 to 2,114,355 _10260 OLJFJH_10265: OLJFJH_10265 - DNA repair protein RecO, at 2,114,361 to 2,115,098 _10265 OLJFJH_10270: OLJFJH_10270 - pyridoxine 5'-phosphate synthase, at 2,115,173 to 2,115,904 _10270 OLJFJH_10275: OLJFJH_10275 - Holo-[acyl-carrier-protein] synthase, at 2,115,904 to 2,116,284 _10275 Position (kb) 2114 2115 2116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2113.435 kb on + strandat 2114.339 kb on - strandat 2114.509 kb on + strand, within OLJFJH_10265at 2114.619 kb on + strand, within OLJFJH_10265at 2114.620 kb on - strand, within OLJFJH_10265at 2114.632 kb on - strand, within OLJFJH_10265at 2114.850 kb on + strand, within OLJFJH_10265at 2114.876 kb on + strand, within OLJFJH_10265at 2114.876 kb on + strand, within OLJFJH_10265at 2114.876 kb on + strand, within OLJFJH_10265at 2115.096 kb on + strandat 2115.097 kb on - strandat 2115.097 kb on - strandat 2115.097 kb on - strandat 2115.097 kb on - strandat 2115.101 kb on - strandat 2115.109 kb on + strandat 2115.133 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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2,113,435 + +0.0
2,114,339 - +1.8
2,114,509 + OLJFJH_10265 0.20 +0.2
2,114,619 + OLJFJH_10265 0.35 +1.0
2,114,620 - OLJFJH_10265 0.35 -2.1
2,114,632 - OLJFJH_10265 0.37 -4.0
2,114,850 + OLJFJH_10265 0.66 -0.1
2,114,876 + OLJFJH_10265 0.70 -1.2
2,114,876 + OLJFJH_10265 0.70 +1.8
2,114,876 + OLJFJH_10265 0.70 +3.1
2,115,096 + +1.2
2,115,097 - +0.3
2,115,097 - +0.1
2,115,097 - +1.7
2,115,097 - -1.5
2,115,101 - +2.0
2,115,109 + +1.2
2,115,133 + -0.9

Or see this region's nucleotide sequence