Strain Fitness in Erwinia amylovora T8 around OLJFJH_09535

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09530 and OLJFJH_09535 overlap by 4 nucleotidesOLJFJH_09535 and OLJFJH_09540 are separated by 76 nucleotidesOLJFJH_09540 and OLJFJH_09545 overlap by 54 nucleotides OLJFJH_09530: OLJFJH_09530 - type III secretion system protein, at 1,971,067 to 1,973,172 _09530 OLJFJH_09535: OLJFJH_09535 - Carrier domain-containing protein, at 1,973,169 to 1,973,411 _09535 OLJFJH_09540: OLJFJH_09540 - hypothetical protein, at 1,973,488 to 1,974,372 _09540 OLJFJH_09545: OLJFJH_09545 - hypothetical protein, at 1,974,319 to 1,974,438 _09545 Position (kb) 1973 1974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1972.299 kb on + strand, within OLJFJH_09530at 1972.546 kb on + strand, within OLJFJH_09530at 1972.547 kb on - strand, within OLJFJH_09530at 1972.689 kb on - strand, within OLJFJH_09530at 1973.007 kb on + strandat 1973.237 kb on + strand, within OLJFJH_09535at 1973.265 kb on + strand, within OLJFJH_09535at 1973.529 kb on + strandat 1973.998 kb on + strand, within OLJFJH_09540at 1973.998 kb on + strand, within OLJFJH_09540at 1973.998 kb on + strand, within OLJFJH_09540at 1973.998 kb on + strand, within OLJFJH_09540at 1974.052 kb on - strand, within OLJFJH_09540at 1974.199 kb on + strand, within OLJFJH_09540

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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1,972,299 + OLJFJH_09530 0.58 -1.2
1,972,546 + OLJFJH_09530 0.70 -4.2
1,972,547 - OLJFJH_09530 0.70 -1.9
1,972,689 - OLJFJH_09530 0.77 -2.1
1,973,007 + +2.0
1,973,237 + OLJFJH_09535 0.28 +0.1
1,973,265 + OLJFJH_09535 0.40 +0.9
1,973,529 + +0.2
1,973,998 + OLJFJH_09540 0.58 +0.4
1,973,998 + OLJFJH_09540 0.58 +0.7
1,973,998 + OLJFJH_09540 0.58 +1.2
1,973,998 + OLJFJH_09540 0.58 -1.2
1,974,052 - OLJFJH_09540 0.64 +3.1
1,974,199 + OLJFJH_09540 0.80 -0.6

Or see this region's nucleotide sequence