Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_09470 and OLJFJH_09475 overlap by 17 nucleotides OLJFJH_09475 and OLJFJH_09480 overlap by 20 nucleotides OLJFJH_09480 and OLJFJH_09485 overlap by 4 nucleotides
OLJFJH_09470: OLJFJH_09470 - type III secretion system ATPase SctN, at 1,958,983 to 1,960,278
_09470
OLJFJH_09475: OLJFJH_09475 - type III secretion system protein, at 1,960,262 to 1,960,723
_09475
OLJFJH_09480: OLJFJH_09480 - type III secretion system protein, at 1,960,704 to 1,961,708
_09480
OLJFJH_09485: OLJFJH_09485 - type III secretion system protein, at 1,961,705 to 1,962,631
_09485
Position (kb)
1960
1961 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1959.389 kb on + strand, within OLJFJH_09470 at 1959.459 kb on - strand, within OLJFJH_09470 at 1959.481 kb on - strand, within OLJFJH_09470 at 1959.527 kb on + strand, within OLJFJH_09470 at 1959.527 kb on + strand, within OLJFJH_09470 at 1959.528 kb on - strand, within OLJFJH_09470 at 1959.528 kb on - strand, within OLJFJH_09470 at 1959.528 kb on - strand, within OLJFJH_09470 at 1959.528 kb on - strand, within OLJFJH_09470 at 1959.529 kb on + strand, within OLJFJH_09470 at 1959.529 kb on + strand, within OLJFJH_09470 at 1959.529 kb on + strand, within OLJFJH_09470 at 1959.529 kb on + strand, within OLJFJH_09470 at 1959.529 kb on + strand, within OLJFJH_09470 at 1959.530 kb on - strand, within OLJFJH_09470 at 1959.530 kb on - strand, within OLJFJH_09470 at 1959.530 kb on - strand, within OLJFJH_09470 at 1959.530 kb on - strand, within OLJFJH_09470 at 1959.546 kb on - strand, within OLJFJH_09470 at 1959.546 kb on - strand, within OLJFJH_09470 at 1959.625 kb on + strand, within OLJFJH_09470 at 1959.661 kb on - strand, within OLJFJH_09470 at 1959.661 kb on - strand, within OLJFJH_09470 at 1959.661 kb on - strand, within OLJFJH_09470 at 1959.661 kb on - strand, within OLJFJH_09470 at 1959.720 kb on - strand, within OLJFJH_09470 at 1959.776 kb on + strand, within OLJFJH_09470 at 1959.776 kb on + strand, within OLJFJH_09470 at 1959.964 kb on - strand, within OLJFJH_09470 at 1959.968 kb on - strand, within OLJFJH_09470 at 1960.010 kb on + strand, within OLJFJH_09470 at 1960.011 kb on - strand, within OLJFJH_09470 at 1960.011 kb on - strand, within OLJFJH_09470 at 1960.016 kb on + strand, within OLJFJH_09470 at 1960.017 kb on - strand, within OLJFJH_09470 at 1960.026 kb on + strand, within OLJFJH_09470 at 1960.026 kb on + strand, within OLJFJH_09470 at 1960.113 kb on + strand, within OLJFJH_09470 at 1960.114 kb on - strand, within OLJFJH_09470 at 1960.114 kb on - strand, within OLJFJH_09470 at 1960.141 kb on + strand, within OLJFJH_09470 at 1960.141 kb on + strand, within OLJFJH_09470 at 1960.142 kb on - strand, within OLJFJH_09470 at 1960.142 kb on - strand, within OLJFJH_09470 at 1960.334 kb on - strand, within OLJFJH_09475 at 1960.462 kb on - strand, within OLJFJH_09475 at 1960.464 kb on - strand, within OLJFJH_09475 at 1960.853 kb on + strand, within OLJFJH_09480 at 1960.882 kb on + strand, within OLJFJH_09480 at 1960.884 kb on + strand, within OLJFJH_09480 at 1961.085 kb on - strand, within OLJFJH_09480 at 1961.124 kb on - strand, within OLJFJH_09480 at 1961.277 kb on + strand, within OLJFJH_09480 at 1961.277 kb on + strand, within OLJFJH_09480 at 1961.298 kb on - strand, within OLJFJH_09480 at 1961.321 kb on - strand, within OLJFJH_09480 at 1961.468 kb on + strand, within OLJFJH_09480 at 1961.468 kb on + strand, within OLJFJH_09480 at 1961.469 kb on - strand, within OLJFJH_09480 at 1961.473 kb on - strand, within OLJFJH_09480 at 1961.473 kb on - strand, within OLJFJH_09480 at 1961.522 kb on + strand, within OLJFJH_09480 at 1961.546 kb on + strand, within OLJFJH_09480 at 1961.617 kb on - strand at 1961.618 kb on + strand at 1961.619 kb on - strand at 1961.619 kb on - strand at 1961.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 1,959,389 + OLJFJH_09470 0.31 +0.6 1,959,459 - OLJFJH_09470 0.37 +1.6 1,959,481 - OLJFJH_09470 0.38 -5.3 1,959,527 + OLJFJH_09470 0.42 -2.0 1,959,527 + OLJFJH_09470 0.42 -3.4 1,959,528 - OLJFJH_09470 0.42 -2.2 1,959,528 - OLJFJH_09470 0.42 -1.1 1,959,528 - OLJFJH_09470 0.42 +0.8 1,959,528 - OLJFJH_09470 0.42 -2.9 1,959,529 + OLJFJH_09470 0.42 -1.2 1,959,529 + OLJFJH_09470 0.42 +0.2 1,959,529 + OLJFJH_09470 0.42 -2.0 1,959,529 + OLJFJH_09470 0.42 -0.6 1,959,529 + OLJFJH_09470 0.42 -0.2 1,959,530 - OLJFJH_09470 0.42 +0.7 1,959,530 - OLJFJH_09470 0.42 -1.8 1,959,530 - OLJFJH_09470 0.42 -0.9 1,959,530 - OLJFJH_09470 0.42 +0.3 1,959,546 - OLJFJH_09470 0.43 +0.7 1,959,546 - OLJFJH_09470 0.43 +0.2 1,959,625 + OLJFJH_09470 0.50 +0.5 1,959,661 - OLJFJH_09470 0.52 -1.5 1,959,661 - OLJFJH_09470 0.52 -0.9 1,959,661 - OLJFJH_09470 0.52 -0.4 1,959,661 - OLJFJH_09470 0.52 -2.0 1,959,720 - OLJFJH_09470 0.57 -1.2 1,959,776 + OLJFJH_09470 0.61 -0.3 1,959,776 + OLJFJH_09470 0.61 +0.6 1,959,964 - OLJFJH_09470 0.76 +0.6 1,959,968 - OLJFJH_09470 0.76 -1.2 1,960,010 + OLJFJH_09470 0.79 +0.2 1,960,011 - OLJFJH_09470 0.79 -2.1 1,960,011 - OLJFJH_09470 0.79 -0.9 1,960,016 + OLJFJH_09470 0.80 -1.0 1,960,017 - OLJFJH_09470 0.80 +0.3 1,960,026 + OLJFJH_09470 0.80 -0.7 1,960,026 + OLJFJH_09470 0.80 +0.1 1,960,113 + OLJFJH_09470 0.87 +1.1 1,960,114 - OLJFJH_09470 0.87 -0.2 1,960,114 - OLJFJH_09470 0.87 -0.2 1,960,141 + OLJFJH_09470 0.89 -0.3 1,960,141 + OLJFJH_09470 0.89 -0.4 1,960,142 - OLJFJH_09470 0.89 -1.2 1,960,142 - OLJFJH_09470 0.89 +1.6 1,960,334 - OLJFJH_09475 0.16 +0.6 1,960,462 - OLJFJH_09475 0.43 +0.1 1,960,464 - OLJFJH_09475 0.44 +2.6 1,960,853 + OLJFJH_09480 0.15 -2.4 1,960,882 + OLJFJH_09480 0.18 +1.4 1,960,884 + OLJFJH_09480 0.18 +0.8 1,961,085 - OLJFJH_09480 0.38 +2.5 1,961,124 - OLJFJH_09480 0.42 -0.1 1,961,277 + OLJFJH_09480 0.57 +0.3 1,961,277 + OLJFJH_09480 0.57 +0.3 1,961,298 - OLJFJH_09480 0.59 +0.9 1,961,321 - OLJFJH_09480 0.61 +0.5 1,961,468 + OLJFJH_09480 0.76 -1.4 1,961,468 + OLJFJH_09480 0.76 +0.7 1,961,469 - OLJFJH_09480 0.76 +0.7 1,961,473 - OLJFJH_09480 0.77 +0.7 1,961,473 - OLJFJH_09480 0.77 +1.0 1,961,522 + OLJFJH_09480 0.81 -1.9 1,961,546 + OLJFJH_09480 0.84 -1.0 1,961,617 - -0.5 1,961,618 + +0.4 1,961,619 - +0.1 1,961,619 - -1.7 1,961,619 - +0.5
Or see this region's nucleotide sequence