Strain Fitness in Erwinia amylovora T8 around OLJFJH_09475

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09470 and OLJFJH_09475 overlap by 17 nucleotidesOLJFJH_09475 and OLJFJH_09480 overlap by 20 nucleotidesOLJFJH_09480 and OLJFJH_09485 overlap by 4 nucleotides OLJFJH_09470: OLJFJH_09470 - type III secretion system ATPase SctN, at 1,958,983 to 1,960,278 _09470 OLJFJH_09475: OLJFJH_09475 - type III secretion system protein, at 1,960,262 to 1,960,723 _09475 OLJFJH_09480: OLJFJH_09480 - type III secretion system protein, at 1,960,704 to 1,961,708 _09480 OLJFJH_09485: OLJFJH_09485 - type III secretion system protein, at 1,961,705 to 1,962,631 _09485 Position (kb) 1960 1961Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1959.389 kb on + strand, within OLJFJH_09470at 1959.459 kb on - strand, within OLJFJH_09470at 1959.481 kb on - strand, within OLJFJH_09470at 1959.527 kb on + strand, within OLJFJH_09470at 1959.527 kb on + strand, within OLJFJH_09470at 1959.528 kb on - strand, within OLJFJH_09470at 1959.528 kb on - strand, within OLJFJH_09470at 1959.528 kb on - strand, within OLJFJH_09470at 1959.528 kb on - strand, within OLJFJH_09470at 1959.529 kb on + strand, within OLJFJH_09470at 1959.529 kb on + strand, within OLJFJH_09470at 1959.529 kb on + strand, within OLJFJH_09470at 1959.529 kb on + strand, within OLJFJH_09470at 1959.529 kb on + strand, within OLJFJH_09470at 1959.530 kb on - strand, within OLJFJH_09470at 1959.530 kb on - strand, within OLJFJH_09470at 1959.530 kb on - strand, within OLJFJH_09470at 1959.530 kb on - strand, within OLJFJH_09470at 1959.546 kb on - strand, within OLJFJH_09470at 1959.546 kb on - strand, within OLJFJH_09470at 1959.625 kb on + strand, within OLJFJH_09470at 1959.661 kb on - strand, within OLJFJH_09470at 1959.661 kb on - strand, within OLJFJH_09470at 1959.661 kb on - strand, within OLJFJH_09470at 1959.661 kb on - strand, within OLJFJH_09470at 1959.720 kb on - strand, within OLJFJH_09470at 1959.776 kb on + strand, within OLJFJH_09470at 1959.776 kb on + strand, within OLJFJH_09470at 1959.964 kb on - strand, within OLJFJH_09470at 1959.968 kb on - strand, within OLJFJH_09470at 1960.010 kb on + strand, within OLJFJH_09470at 1960.011 kb on - strand, within OLJFJH_09470at 1960.011 kb on - strand, within OLJFJH_09470at 1960.016 kb on + strand, within OLJFJH_09470at 1960.017 kb on - strand, within OLJFJH_09470at 1960.026 kb on + strand, within OLJFJH_09470at 1960.026 kb on + strand, within OLJFJH_09470at 1960.113 kb on + strand, within OLJFJH_09470at 1960.114 kb on - strand, within OLJFJH_09470at 1960.114 kb on - strand, within OLJFJH_09470at 1960.141 kb on + strand, within OLJFJH_09470at 1960.141 kb on + strand, within OLJFJH_09470at 1960.142 kb on - strand, within OLJFJH_09470at 1960.142 kb on - strand, within OLJFJH_09470at 1960.334 kb on - strand, within OLJFJH_09475at 1960.462 kb on - strand, within OLJFJH_09475at 1960.464 kb on - strand, within OLJFJH_09475at 1960.853 kb on + strand, within OLJFJH_09480at 1960.882 kb on + strand, within OLJFJH_09480at 1960.884 kb on + strand, within OLJFJH_09480at 1961.085 kb on - strand, within OLJFJH_09480at 1961.124 kb on - strand, within OLJFJH_09480at 1961.277 kb on + strand, within OLJFJH_09480at 1961.277 kb on + strand, within OLJFJH_09480at 1961.298 kb on - strand, within OLJFJH_09480at 1961.321 kb on - strand, within OLJFJH_09480at 1961.468 kb on + strand, within OLJFJH_09480at 1961.468 kb on + strand, within OLJFJH_09480at 1961.469 kb on - strand, within OLJFJH_09480at 1961.473 kb on - strand, within OLJFJH_09480at 1961.473 kb on - strand, within OLJFJH_09480at 1961.522 kb on + strand, within OLJFJH_09480at 1961.546 kb on + strand, within OLJFJH_09480at 1961.617 kb on - strandat 1961.618 kb on + strandat 1961.619 kb on - strandat 1961.619 kb on - strandat 1961.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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1,959,389 + OLJFJH_09470 0.31 +0.6
1,959,459 - OLJFJH_09470 0.37 +1.6
1,959,481 - OLJFJH_09470 0.38 -5.3
1,959,527 + OLJFJH_09470 0.42 -2.0
1,959,527 + OLJFJH_09470 0.42 -3.4
1,959,528 - OLJFJH_09470 0.42 -2.2
1,959,528 - OLJFJH_09470 0.42 -1.1
1,959,528 - OLJFJH_09470 0.42 +0.8
1,959,528 - OLJFJH_09470 0.42 -2.9
1,959,529 + OLJFJH_09470 0.42 -1.2
1,959,529 + OLJFJH_09470 0.42 +0.2
1,959,529 + OLJFJH_09470 0.42 -2.0
1,959,529 + OLJFJH_09470 0.42 -0.6
1,959,529 + OLJFJH_09470 0.42 -0.2
1,959,530 - OLJFJH_09470 0.42 +0.7
1,959,530 - OLJFJH_09470 0.42 -1.8
1,959,530 - OLJFJH_09470 0.42 -0.9
1,959,530 - OLJFJH_09470 0.42 +0.3
1,959,546 - OLJFJH_09470 0.43 +0.7
1,959,546 - OLJFJH_09470 0.43 +0.2
1,959,625 + OLJFJH_09470 0.50 +0.5
1,959,661 - OLJFJH_09470 0.52 -1.5
1,959,661 - OLJFJH_09470 0.52 -0.9
1,959,661 - OLJFJH_09470 0.52 -0.4
1,959,661 - OLJFJH_09470 0.52 -2.0
1,959,720 - OLJFJH_09470 0.57 -1.2
1,959,776 + OLJFJH_09470 0.61 -0.3
1,959,776 + OLJFJH_09470 0.61 +0.6
1,959,964 - OLJFJH_09470 0.76 +0.6
1,959,968 - OLJFJH_09470 0.76 -1.2
1,960,010 + OLJFJH_09470 0.79 +0.2
1,960,011 - OLJFJH_09470 0.79 -2.1
1,960,011 - OLJFJH_09470 0.79 -0.9
1,960,016 + OLJFJH_09470 0.80 -1.0
1,960,017 - OLJFJH_09470 0.80 +0.3
1,960,026 + OLJFJH_09470 0.80 -0.7
1,960,026 + OLJFJH_09470 0.80 +0.1
1,960,113 + OLJFJH_09470 0.87 +1.1
1,960,114 - OLJFJH_09470 0.87 -0.2
1,960,114 - OLJFJH_09470 0.87 -0.2
1,960,141 + OLJFJH_09470 0.89 -0.3
1,960,141 + OLJFJH_09470 0.89 -0.4
1,960,142 - OLJFJH_09470 0.89 -1.2
1,960,142 - OLJFJH_09470 0.89 +1.6
1,960,334 - OLJFJH_09475 0.16 +0.6
1,960,462 - OLJFJH_09475 0.43 +0.1
1,960,464 - OLJFJH_09475 0.44 +2.6
1,960,853 + OLJFJH_09480 0.15 -2.4
1,960,882 + OLJFJH_09480 0.18 +1.4
1,960,884 + OLJFJH_09480 0.18 +0.8
1,961,085 - OLJFJH_09480 0.38 +2.5
1,961,124 - OLJFJH_09480 0.42 -0.1
1,961,277 + OLJFJH_09480 0.57 +0.3
1,961,277 + OLJFJH_09480 0.57 +0.3
1,961,298 - OLJFJH_09480 0.59 +0.9
1,961,321 - OLJFJH_09480 0.61 +0.5
1,961,468 + OLJFJH_09480 0.76 -1.4
1,961,468 + OLJFJH_09480 0.76 +0.7
1,961,469 - OLJFJH_09480 0.76 +0.7
1,961,473 - OLJFJH_09480 0.77 +0.7
1,961,473 - OLJFJH_09480 0.77 +1.0
1,961,522 + OLJFJH_09480 0.81 -1.9
1,961,546 + OLJFJH_09480 0.84 -1.0
1,961,617 - -0.5
1,961,618 + +0.4
1,961,619 - +0.1
1,961,619 - -1.7
1,961,619 - +0.5

Or see this region's nucleotide sequence