Strain Fitness in Erwinia amylovora T8 around OLJFJH_09455

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_09450 and OLJFJH_09455 are separated by 14 nucleotidesOLJFJH_09455 and OLJFJH_09460 are separated by 47 nucleotides OLJFJH_09450: OLJFJH_09450 - type III secretion system outer membrane ring subunit SctC, at 1,953,550 to 1,955,319 _09450 OLJFJH_09455: OLJFJH_09455 - type III secretion system gatekeeper subunit SctW, at 1,955,334 to 1,956,446 _09455 OLJFJH_09460: OLJFJH_09460 - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 1,956,494 to 1,958,557 _09460 Position (kb) 1955 1956 1957Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1954.407 kb on + strand, within OLJFJH_09450at 1954.407 kb on + strand, within OLJFJH_09450at 1954.408 kb on - strand, within OLJFJH_09450at 1954.456 kb on + strand, within OLJFJH_09450at 1954.657 kb on - strand, within OLJFJH_09450at 1954.683 kb on + strand, within OLJFJH_09450at 1954.706 kb on + strand, within OLJFJH_09450at 1954.794 kb on + strand, within OLJFJH_09450at 1954.795 kb on - strand, within OLJFJH_09450at 1954.798 kb on - strand, within OLJFJH_09450at 1954.855 kb on + strand, within OLJFJH_09450at 1954.855 kb on + strand, within OLJFJH_09450at 1954.870 kb on - strand, within OLJFJH_09450at 1954.924 kb on - strand, within OLJFJH_09450at 1955.037 kb on + strand, within OLJFJH_09450at 1955.037 kb on + strand, within OLJFJH_09450at 1955.038 kb on - strand, within OLJFJH_09450at 1955.118 kb on + strand, within OLJFJH_09450at 1955.143 kb on + strandat 1955.292 kb on + strandat 1955.293 kb on - strandat 1955.380 kb on - strandat 1955.465 kb on + strand, within OLJFJH_09455at 1955.466 kb on - strand, within OLJFJH_09455at 1955.565 kb on - strand, within OLJFJH_09455at 1955.764 kb on + strand, within OLJFJH_09455at 1956.028 kb on + strand, within OLJFJH_09455at 1956.182 kb on - strand, within OLJFJH_09455at 1956.956 kb on - strand, within OLJFJH_09460at 1957.099 kb on + strand, within OLJFJH_09460at 1957.161 kb on + strand, within OLJFJH_09460at 1957.161 kb on + strand, within OLJFJH_09460at 1957.161 kb on + strand, within OLJFJH_09460at 1957.162 kb on - strand, within OLJFJH_09460at 1957.162 kb on - strand, within OLJFJH_09460at 1957.162 kb on - strand, within OLJFJH_09460at 1957.162 kb on - strand, within OLJFJH_09460at 1957.171 kb on + strand, within OLJFJH_09460at 1957.171 kb on + strand, within OLJFJH_09460at 1957.171 kb on + strand, within OLJFJH_09460at 1957.171 kb on + strand, within OLJFJH_09460at 1957.171 kb on + strand, within OLJFJH_09460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
remove
1,954,407 + OLJFJH_09450 0.48 -0.1
1,954,407 + OLJFJH_09450 0.48 -0.7
1,954,408 - OLJFJH_09450 0.48 +1.5
1,954,456 + OLJFJH_09450 0.51 -0.3
1,954,657 - OLJFJH_09450 0.63 +0.8
1,954,683 + OLJFJH_09450 0.64 +1.5
1,954,706 + OLJFJH_09450 0.65 -0.1
1,954,794 + OLJFJH_09450 0.70 +1.8
1,954,795 - OLJFJH_09450 0.70 +3.4
1,954,798 - OLJFJH_09450 0.71 -2.0
1,954,855 + OLJFJH_09450 0.74 +0.4
1,954,855 + OLJFJH_09450 0.74 -1.2
1,954,870 - OLJFJH_09450 0.75 -2.0
1,954,924 - OLJFJH_09450 0.78 +0.7
1,955,037 + OLJFJH_09450 0.84 -0.9
1,955,037 + OLJFJH_09450 0.84 -0.9
1,955,038 - OLJFJH_09450 0.84 +2.9
1,955,118 + OLJFJH_09450 0.89 +0.3
1,955,143 + -0.8
1,955,292 + -2.6
1,955,293 - +0.5
1,955,380 - -2.8
1,955,465 + OLJFJH_09455 0.12 +1.3
1,955,466 - OLJFJH_09455 0.12 +1.8
1,955,565 - OLJFJH_09455 0.21 -0.7
1,955,764 + OLJFJH_09455 0.39 +2.0
1,956,028 + OLJFJH_09455 0.62 +0.8
1,956,182 - OLJFJH_09455 0.76 -4.1
1,956,956 - OLJFJH_09460 0.22 -1.7
1,957,099 + OLJFJH_09460 0.29 +1.6
1,957,161 + OLJFJH_09460 0.32 -0.0
1,957,161 + OLJFJH_09460 0.32 -0.4
1,957,161 + OLJFJH_09460 0.32 -0.3
1,957,162 - OLJFJH_09460 0.32 +1.5
1,957,162 - OLJFJH_09460 0.32 +0.7
1,957,162 - OLJFJH_09460 0.32 -0.3
1,957,162 - OLJFJH_09460 0.32 +0.7
1,957,171 + OLJFJH_09460 0.33 +0.8
1,957,171 + OLJFJH_09460 0.33 +0.9
1,957,171 + OLJFJH_09460 0.33 +0.6
1,957,171 + OLJFJH_09460 0.33 -0.3
1,957,171 + OLJFJH_09460 0.33 -0.8

Or see this region's nucleotide sequence