Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_09395 and OLJFJH_09400 are separated by 117 nucleotides OLJFJH_09400 and OLJFJH_09405 are separated by 469 nucleotides OLJFJH_09405 and OLJFJH_09410 are separated by 66 nucleotides OLJFJH_09410 and OLJFJH_09415 are separated by 25 nucleotides
OLJFJH_09395: OLJFJH_09395 - Integrase catalytic domain-containing protein, at 1,946,451 to 1,946,804
_09395
OLJFJH_09400: OLJFJH_09400 - IS3 family transposase, at 1,946,922 to 1,946,975
_09400
OLJFJH_09405: OLJFJH_09405 - type III secretion system protein, at 1,947,445 to 1,947,948
_09405
OLJFJH_09410: OLJFJH_09410 - type III secretion system protein, at 1,948,015 to 1,948,383
_09410
OLJFJH_09415: OLJFJH_09415 - type III secretion protein, at 1,948,409 to 1,949,056
_09415
Position (kb)
1947
1948 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1947.139 kb on + strand at 1947.140 kb on - strand at 1947.141 kb on + strand at 1947.141 kb on + strand at 1947.142 kb on - strand at 1947.142 kb on - strand at 1947.592 kb on - strand, within OLJFJH_09405 at 1948.415 kb on - strand at 1948.462 kb on + strand at 1948.498 kb on + strand, within OLJFJH_09415 at 1948.498 kb on + strand, within OLJFJH_09415
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 1,947,139 + -1.2 1,947,140 - -1.5 1,947,141 + +0.6 1,947,141 + -0.1 1,947,142 - -0.4 1,947,142 - +0.6 1,947,592 - OLJFJH_09405 0.29 +0.9 1,948,415 - +2.8 1,948,462 + -0.9 1,948,498 + OLJFJH_09415 0.14 -0.5 1,948,498 + OLJFJH_09415 0.14 -1.7
Or see this region's nucleotide sequence