Strain Fitness in Erwinia amylovora T8 around OLJFJH_09405

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09395 and OLJFJH_09400 are separated by 117 nucleotidesOLJFJH_09400 and OLJFJH_09405 are separated by 469 nucleotidesOLJFJH_09405 and OLJFJH_09410 are separated by 66 nucleotidesOLJFJH_09410 and OLJFJH_09415 are separated by 25 nucleotides OLJFJH_09395: OLJFJH_09395 - Integrase catalytic domain-containing protein, at 1,946,451 to 1,946,804 _09395 OLJFJH_09400: OLJFJH_09400 - IS3 family transposase, at 1,946,922 to 1,946,975 _09400 OLJFJH_09405: OLJFJH_09405 - type III secretion system protein, at 1,947,445 to 1,947,948 _09405 OLJFJH_09410: OLJFJH_09410 - type III secretion system protein, at 1,948,015 to 1,948,383 _09410 OLJFJH_09415: OLJFJH_09415 - type III secretion protein, at 1,948,409 to 1,949,056 _09415 Position (kb) 1947 1948Strain fitness (log2 ratio) -1 0 1 2 3at 1947.139 kb on + strandat 1947.140 kb on - strandat 1947.141 kb on + strandat 1947.141 kb on + strandat 1947.142 kb on - strandat 1947.142 kb on - strandat 1947.592 kb on - strand, within OLJFJH_09405at 1948.415 kb on - strandat 1948.462 kb on + strandat 1948.498 kb on + strand, within OLJFJH_09415at 1948.498 kb on + strand, within OLJFJH_09415

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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1,947,139 + -1.2
1,947,140 - -1.5
1,947,141 + +0.6
1,947,141 + -0.1
1,947,142 - -0.4
1,947,142 - +0.6
1,947,592 - OLJFJH_09405 0.29 +0.9
1,948,415 - +2.8
1,948,462 + -0.9
1,948,498 + OLJFJH_09415 0.14 -0.5
1,948,498 + OLJFJH_09415 0.14 -1.7

Or see this region's nucleotide sequence