Strain Fitness in Erwinia amylovora T8 around OLJFJH_08310

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08300 and OLJFJH_08305 overlap by 58 nucleotidesOLJFJH_08305 and OLJFJH_08310 are separated by 1 nucleotidesOLJFJH_08310 and OLJFJH_08315 are separated by 77 nucleotidesOLJFJH_08315 and OLJFJH_08320 are separated by 459 nucleotides OLJFJH_08300: OLJFJH_08300 - hypothetical protein, at 1,713,918 to 1,714,688 _08300 OLJFJH_08305: OLJFJH_08305 - hypothetical protein, at 1,714,631 to 1,714,933 _08305 OLJFJH_08310: OLJFJH_08310 - hypothetical protein, at 1,714,935 to 1,715,876 _08310 OLJFJH_08315: OLJFJH_08315 - hypothetical protein, at 1,715,954 to 1,716,043 _08315 OLJFJH_08320: OLJFJH_08320 - hypothetical protein, at 1,716,503 to 1,716,868 _08320 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1714.244 kb on - strand, within OLJFJH_08300at 1714.244 kb on - strand, within OLJFJH_08300at 1714.264 kb on + strand, within OLJFJH_08300at 1714.434 kb on + strand, within OLJFJH_08300at 1714.448 kb on + strand, within OLJFJH_08300at 1714.534 kb on - strand, within OLJFJH_08300at 1714.728 kb on - strand, within OLJFJH_08305at 1714.970 kb on + strandat 1715.230 kb on - strand, within OLJFJH_08310at 1715.354 kb on - strand, within OLJFJH_08310at 1715.449 kb on + strand, within OLJFJH_08310at 1715.550 kb on - strand, within OLJFJH_08310at 1716.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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1,714,244 - OLJFJH_08300 0.42 +0.1
1,714,244 - OLJFJH_08300 0.42 -0.1
1,714,264 + OLJFJH_08300 0.45 +0.5
1,714,434 + OLJFJH_08300 0.67 -0.5
1,714,448 + OLJFJH_08300 0.69 +0.7
1,714,534 - OLJFJH_08300 0.80 +0.7
1,714,728 - OLJFJH_08305 0.32 +0.7
1,714,970 + -1.2
1,715,230 - OLJFJH_08310 0.31 +1.1
1,715,354 - OLJFJH_08310 0.44 +1.0
1,715,449 + OLJFJH_08310 0.55 +0.5
1,715,550 - OLJFJH_08310 0.65 -4.0
1,716,423 - -0.9

Or see this region's nucleotide sequence