Strain Fitness in Erwinia amylovora T8 around OLJFJH_06135

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06130 and OLJFJH_06135 are separated by 50 nucleotidesOLJFJH_06135 and OLJFJH_06140 are separated by 134 nucleotides OLJFJH_06130: OLJFJH_06130 - argininosuccinate lyase, at 1,238,574 to 1,239,947 _06130 OLJFJH_06135: OLJFJH_06135 - glutathione peroxidase, at 1,239,998 to 1,240,729 _06135 OLJFJH_06140: OLJFJH_06140 - DNA-binding transcriptional regulator OxyR, at 1,240,864 to 1,241,769 _06140 Position (kb) 1239 1240 1241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1239.036 kb on - strand, within OLJFJH_06130at 1239.088 kb on - strand, within OLJFJH_06130at 1239.259 kb on + strand, within OLJFJH_06130at 1239.469 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.523 kb on - strand, within OLJFJH_06130at 1239.525 kb on - strand, within OLJFJH_06130at 1239.533 kb on + strand, within OLJFJH_06130at 1239.534 kb on - strand, within OLJFJH_06130at 1239.534 kb on - strand, within OLJFJH_06130at 1239.642 kb on - strand, within OLJFJH_06130at 1239.664 kb on - strand, within OLJFJH_06130at 1239.690 kb on + strand, within OLJFJH_06130at 1239.690 kb on + strand, within OLJFJH_06130at 1239.731 kb on + strand, within OLJFJH_06130at 1239.731 kb on + strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1240.000 kb on - strandat 1240.019 kb on + strandat 1240.020 kb on - strandat 1240.039 kb on + strandat 1240.174 kb on + strand, within OLJFJH_06135at 1240.174 kb on + strand, within OLJFJH_06135at 1240.174 kb on + strand, within OLJFJH_06135at 1240.175 kb on - strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.230 kb on + strand, within OLJFJH_06135at 1240.231 kb on - strand, within OLJFJH_06135at 1240.231 kb on - strand, within OLJFJH_06135at 1240.246 kb on - strand, within OLJFJH_06135at 1240.441 kb on + strand, within OLJFJH_06135at 1240.442 kb on - strand, within OLJFJH_06135at 1240.442 kb on - strand, within OLJFJH_06135at 1240.555 kb on + strand, within OLJFJH_06135at 1240.557 kb on + strand, within OLJFJH_06135at 1240.585 kb on + strand, within OLJFJH_06135at 1240.592 kb on - strand, within OLJFJH_06135at 1240.708 kb on + strandat 1240.708 kb on + strandat 1240.729 kb on + strandat 1240.730 kb on - strandat 1240.730 kb on - strandat 1240.730 kb on - strandat 1240.730 kb on - strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.782 kb on + strandat 1240.782 kb on + strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.785 kb on + strandat 1240.785 kb on + strandat 1240.785 kb on + strandat 1240.786 kb on - strandat 1240.861 kb on - strandat 1240.861 kb on - strandat 1240.870 kb on - strandat 1241.034 kb on + strand, within OLJFJH_06140at 1241.145 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.231 kb on - strand, within OLJFJH_06140at 1241.231 kb on - strand, within OLJFJH_06140at 1241.231 kb on - strand, within OLJFJH_06140at 1241.336 kb on + strand, within OLJFJH_06140at 1241.550 kb on + strand, within OLJFJH_06140at 1241.641 kb on + strand, within OLJFJH_06140at 1241.642 kb on - strand, within OLJFJH_06140at 1241.643 kb on + strand, within OLJFJH_06140

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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1,239,036 - OLJFJH_06130 0.34 -0.4
1,239,088 - OLJFJH_06130 0.37 +0.0
1,239,259 + OLJFJH_06130 0.50 -0.4
1,239,469 + OLJFJH_06130 0.65 +1.1
1,239,522 + OLJFJH_06130 0.69 -0.7
1,239,522 + OLJFJH_06130 0.69 -0.1
1,239,522 + OLJFJH_06130 0.69 -1.2
1,239,522 + OLJFJH_06130 0.69 +0.3
1,239,523 - OLJFJH_06130 0.69 -1.2
1,239,525 - OLJFJH_06130 0.69 -2.2
1,239,533 + OLJFJH_06130 0.70 -0.2
1,239,534 - OLJFJH_06130 0.70 +0.2
1,239,534 - OLJFJH_06130 0.70 -0.2
1,239,642 - OLJFJH_06130 0.78 -1.9
1,239,664 - OLJFJH_06130 0.79 -2.4
1,239,690 + OLJFJH_06130 0.81 -1.9
1,239,690 + OLJFJH_06130 0.81 +0.7
1,239,731 + OLJFJH_06130 0.84 +1.1
1,239,731 + OLJFJH_06130 0.84 +0.1
1,239,732 - OLJFJH_06130 0.84 +0.1
1,239,732 - OLJFJH_06130 0.84 -0.6
1,239,732 - OLJFJH_06130 0.84 -0.4
1,239,732 - OLJFJH_06130 0.84 -0.5
1,239,732 - OLJFJH_06130 0.84 -0.8
1,239,732 - OLJFJH_06130 0.84 -2.0
1,239,733 + OLJFJH_06130 0.84 +1.3
1,239,733 + OLJFJH_06130 0.84 +0.6
1,239,733 + OLJFJH_06130 0.84 +0.3
1,239,733 + OLJFJH_06130 0.84 -2.1
1,239,733 + OLJFJH_06130 0.84 +1.7
1,239,733 + OLJFJH_06130 0.84 -3.0
1,239,733 + OLJFJH_06130 0.84 +0.8
1,239,733 + OLJFJH_06130 0.84 +0.3
1,239,733 + OLJFJH_06130 0.84 +0.2
1,239,734 - OLJFJH_06130 0.84 -1.3
1,239,734 - OLJFJH_06130 0.84 -1.1
1,239,734 - OLJFJH_06130 0.84 -0.5
1,239,734 - OLJFJH_06130 0.84 -0.9
1,239,734 - OLJFJH_06130 0.84 -0.1
1,239,734 - OLJFJH_06130 0.84 -0.5
1,239,734 - OLJFJH_06130 0.84 -3.5
1,239,734 - OLJFJH_06130 0.84 +0.7
1,239,734 - OLJFJH_06130 0.84 -1.1
1,240,000 - -4.0
1,240,019 + +0.0
1,240,020 - +3.0
1,240,039 + +0.7
1,240,174 + OLJFJH_06135 0.24 -1.4
1,240,174 + OLJFJH_06135 0.24 +1.4
1,240,174 + OLJFJH_06135 0.24 -0.0
1,240,175 - OLJFJH_06135 0.24 +0.9
1,240,228 + OLJFJH_06135 0.31 +3.6
1,240,228 + OLJFJH_06135 0.31 +0.6
1,240,228 + OLJFJH_06135 0.31 +0.5
1,240,228 + OLJFJH_06135 0.31 -0.3
1,240,229 - OLJFJH_06135 0.32 -0.9
1,240,229 - OLJFJH_06135 0.32 +0.9
1,240,229 - OLJFJH_06135 0.32 +0.6
1,240,229 - OLJFJH_06135 0.32 -0.1
1,240,229 - OLJFJH_06135 0.32 +5.6
1,240,230 + OLJFJH_06135 0.32 +0.9
1,240,231 - OLJFJH_06135 0.32 -1.3
1,240,231 - OLJFJH_06135 0.32 -0.1
1,240,246 - OLJFJH_06135 0.34 -0.5
1,240,441 + OLJFJH_06135 0.61 +5.6
1,240,442 - OLJFJH_06135 0.61 +0.7
1,240,442 - OLJFJH_06135 0.61 -3.7
1,240,555 + OLJFJH_06135 0.76 -2.4
1,240,557 + OLJFJH_06135 0.76 -0.6
1,240,585 + OLJFJH_06135 0.80 +0.1
1,240,592 - OLJFJH_06135 0.81 +1.4
1,240,708 + +0.3
1,240,708 + -1.1
1,240,729 + +0.4
1,240,730 - -0.5
1,240,730 - -0.4
1,240,730 - +0.4
1,240,730 - +0.3
1,240,764 + +1.4
1,240,764 + -1.2
1,240,764 + -0.6
1,240,764 + +0.7
1,240,782 + -0.1
1,240,782 + +0.1
1,240,783 - +1.0
1,240,783 - +1.0
1,240,783 - -0.2
1,240,783 - +1.0
1,240,783 - +0.3
1,240,785 + -0.3
1,240,785 + +2.1
1,240,785 + +1.0
1,240,786 - -0.1
1,240,861 - +0.7
1,240,861 - -0.4
1,240,870 - -0.2
1,241,034 + OLJFJH_06140 0.19 -0.3
1,241,145 + OLJFJH_06140 0.31 +0.6
1,241,230 + OLJFJH_06140 0.40 -0.4
1,241,230 + OLJFJH_06140 0.40 -0.0
1,241,230 + OLJFJH_06140 0.40 -2.8
1,241,230 + OLJFJH_06140 0.40 -1.4
1,241,230 + OLJFJH_06140 0.40 +1.0
1,241,230 + OLJFJH_06140 0.40 +5.6
1,241,230 + OLJFJH_06140 0.40 +0.1
1,241,231 - OLJFJH_06140 0.41 +0.7
1,241,231 - OLJFJH_06140 0.41 +0.6
1,241,231 - OLJFJH_06140 0.41 -0.8
1,241,336 + OLJFJH_06140 0.52 +0.9
1,241,550 + OLJFJH_06140 0.76 -2.7
1,241,641 + OLJFJH_06140 0.86 +0.7
1,241,642 - OLJFJH_06140 0.86 -0.1
1,241,643 + OLJFJH_06140 0.86 -1.1

Or see this region's nucleotide sequence