Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_05700 and OLJFJH_05705 are separated by 271 nucleotides OLJFJH_05705 and OLJFJH_05710 are separated by 1 nucleotides OLJFJH_05710 and OLJFJH_05715 are separated by 245 nucleotides
OLJFJH_05700: OLJFJH_05700 - site-specific integrase, at 1,157,706 to 1,158,992
_05700
OLJFJH_05705: OLJFJH_05705 - hypothetical protein, at 1,159,264 to 1,159,572
_05705
OLJFJH_05710: OLJFJH_05710 - AlpA family phage regulatory protein, at 1,159,574 to 1,159,810
_05710
OLJFJH_05715: OLJFJH_05715 - DUF3800 domain-containing protein, at 1,160,056 to 1,160,787
_05715
Position (kb) 1159
1160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1158.521 kb on + strand, within OLJFJH_05700 at 1158.609 kb on + strand, within OLJFJH_05700 at 1158.917 kb on + strand at 1159.535 kb on - strand, within OLJFJH_05705 at 1159.601 kb on - strand, within OLJFJH_05710 at 1159.663 kb on + strand, within OLJFJH_05710 at 1159.664 kb on - strand, within OLJFJH_05710 at 1159.716 kb on + strand, within OLJFJH_05710 at 1159.849 kb on - strand at 1159.849 kb on - strand at 1159.888 kb on + strand at 1159.888 kb on + strand at 1159.889 kb on - strand at 1159.896 kb on + strand at 1159.954 kb on + strand at 1160.056 kb on - strand at 1160.149 kb on - strand, within OLJFJH_05715
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 1,158,521 + OLJFJH_05700 0.63 -0.6 1,158,609 + OLJFJH_05700 0.70 +1.4 1,158,917 + +0.4 1,159,535 - OLJFJH_05705 0.88 +1.2 1,159,601 - OLJFJH_05710 0.11 +0.4 1,159,663 + OLJFJH_05710 0.38 -0.3 1,159,664 - OLJFJH_05710 0.38 +0.4 1,159,716 + OLJFJH_05710 0.60 +0.4 1,159,849 - -2.1 1,159,849 - +0.6 1,159,888 + +1.3 1,159,888 + +0.2 1,159,889 - +1.3 1,159,896 + -0.4 1,159,954 + +0.7 1,160,056 - +0.5 1,160,149 - OLJFJH_05715 0.13 +3.2
Or see this region's nucleotide sequence