Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_05670 and OLJFJH_05675 are separated by 191 nucleotides OLJFJH_05675 and OLJFJH_05680 are separated by 87 nucleotides OLJFJH_05680 and OLJFJH_05685 overlap by 20 nucleotides OLJFJH_05685 and OLJFJH_05690 are separated by 89 nucleotides
OLJFJH_05670: OLJFJH_05670 - hypothetical protein, at 1,152,979 to 1,153,716
_05670
OLJFJH_05675: OLJFJH_05675 - hypothetical protein, at 1,153,908 to 1,154,327
_05675
OLJFJH_05680: OLJFJH_05680 - hypothetical protein, at 1,154,415 to 1,154,813
_05680
OLJFJH_05685: OLJFJH_05685 - hypothetical protein, at 1,154,794 to 1,155,699
_05685
OLJFJH_05690: OLJFJH_05690 - hypothetical protein, at 1,155,789 to 1,156,448
_05690
Position (kb) 1154
1155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1153.468 kb on + strand, within OLJFJH_05670 at 1153.688 kb on - strand at 1154.315 kb on + strand at 1154.394 kb on + strand at 1154.644 kb on + strand, within OLJFJH_05680 at 1154.651 kb on + strand, within OLJFJH_05680 at 1154.669 kb on + strand, within OLJFJH_05680 at 1154.964 kb on + strand, within OLJFJH_05685
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 1,153,468 + OLJFJH_05670 0.66 +0.4 1,153,688 - -1.0 1,154,315 + +1.2 1,154,394 + +0.9 1,154,644 + OLJFJH_05680 0.57 +1.0 1,154,651 + OLJFJH_05680 0.59 +1.8 1,154,669 + OLJFJH_05680 0.64 -3.7 1,154,964 + OLJFJH_05685 0.19 +0.2
Or see this region's nucleotide sequence