Strain Fitness in Erwinia amylovora T8 around OLJFJH_05255

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05240 and OLJFJH_05245 are separated by 125 nucleotidesOLJFJH_05245 and OLJFJH_05250 are separated by 70 nucleotidesOLJFJH_05250 and OLJFJH_05255 are separated by 44 nucleotidesOLJFJH_05255 and OLJFJH_05260 are separated by 339 nucleotides OLJFJH_05240: OLJFJH_05240 - Levansucrase, at 1,042,946 to 1,044,193 _05240 OLJFJH_05245: OLJFJH_05245 - phage holin lambda family, at 1,044,319 to 1,044,636 _05245 OLJFJH_05250: OLJFJH_05250 - hypothetical protein, at 1,044,707 to 1,044,952 _05250 OLJFJH_05255: OLJFJH_05255 - hypothetical protein, at 1,044,997 to 1,045,290 _05255 OLJFJH_05260: OLJFJH_05260 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 1,045,630 to 1,047,459 _05260 Position (kb) 1044 1045 1046Strain fitness (log2 ratio) -1 0 1 2 3at 1043.999 kb on + strand, within OLJFJH_05240at 1043.999 kb on + strand, within OLJFJH_05240at 1044.000 kb on - strand, within OLJFJH_05240at 1044.000 kb on - strand, within OLJFJH_05240at 1044.009 kb on - strand, within OLJFJH_05240at 1044.009 kb on - strand, within OLJFJH_05240at 1044.009 kb on - strand, within OLJFJH_05240at 1044.013 kb on + strand, within OLJFJH_05240at 1044.161 kb on - strandat 1044.242 kb on + strandat 1044.316 kb on + strandat 1044.319 kb on - strandat 1044.396 kb on - strand, within OLJFJH_05245at 1044.634 kb on + strandat 1044.634 kb on + strandat 1044.775 kb on + strand, within OLJFJH_05250at 1044.786 kb on - strand, within OLJFJH_05250at 1044.820 kb on + strand, within OLJFJH_05250at 1045.193 kb on + strand, within OLJFJH_05255at 1045.196 kb on + strand, within OLJFJH_05255at 1045.401 kb on + strandat 1045.459 kb on + strandat 1045.460 kb on - strandat 1045.501 kb on - strandat 1045.504 kb on + strandat 1045.515 kb on + strandat 1045.534 kb on + strandat 1045.556 kb on + strandat 1045.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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1,043,999 + OLJFJH_05240 0.84 +1.8
1,043,999 + OLJFJH_05240 0.84 -0.2
1,044,000 - OLJFJH_05240 0.84 +1.1
1,044,000 - OLJFJH_05240 0.84 +0.8
1,044,009 - OLJFJH_05240 0.85 +1.2
1,044,009 - OLJFJH_05240 0.85 +0.1
1,044,009 - OLJFJH_05240 0.85 -0.0
1,044,013 + OLJFJH_05240 0.85 +0.5
1,044,161 - +1.2
1,044,242 + -0.2
1,044,316 + -1.2
1,044,319 - -0.4
1,044,396 - OLJFJH_05245 0.24 +1.1
1,044,634 + +0.6
1,044,634 + -1.0
1,044,775 + OLJFJH_05250 0.28 -0.5
1,044,786 - OLJFJH_05250 0.32 +0.4
1,044,820 + OLJFJH_05250 0.46 +2.2
1,045,193 + OLJFJH_05255 0.67 +0.1
1,045,196 + OLJFJH_05255 0.68 +1.2
1,045,401 + -0.4
1,045,459 + +0.1
1,045,460 - +0.1
1,045,501 - +0.8
1,045,504 + +3.4
1,045,515 + +0.1
1,045,534 + +1.1
1,045,556 + +2.2
1,045,603 - -0.3

Or see this region's nucleotide sequence