Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04930 and OLJFJH_04935 are separated by 571 nucleotides OLJFJH_04935 and OLJFJH_04940 are separated by 224 nucleotides
OLJFJH_04930: OLJFJH_04930 - DNA adenine methylase, at 976,036 to 977,889
_04930
OLJFJH_04935: OLJFJH_04935 - Transcriptional regulator, at 978,461 to 978,736
_04935
OLJFJH_04940: OLJFJH_04940 - mannitol dehydrogenase family protein, at 978,961 to 980,364
_04940
Position (kb) 978
979 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 977.746 kb on - strand at 977.964 kb on - strand at 977.976 kb on - strand at 977.980 kb on - strand at 978.074 kb on - strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.089 kb on + strand at 978.090 kb on - strand at 978.090 kb on - strand at 978.090 kb on - strand at 978.090 kb on - strand at 978.142 kb on - strand at 978.179 kb on - strand at 978.235 kb on + strand at 978.235 kb on + strand at 978.236 kb on - strand at 978.236 kb on - strand at 978.236 kb on - strand at 978.236 kb on - strand at 978.252 kb on + strand at 978.252 kb on + strand at 978.252 kb on + strand at 978.253 kb on - strand at 978.513 kb on + strand, within OLJFJH_04935 at 978.715 kb on + strand at 978.715 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.767 kb on + strand at 978.768 kb on - strand at 978.768 kb on - strand at 978.768 kb on - strand at 978.768 kb on - strand at 978.911 kb on + strand at 978.923 kb on + strand at 978.924 kb on - strand at 978.956 kb on - strand at 979.040 kb on - strand at 979.312 kb on + strand, within OLJFJH_04940 at 979.313 kb on - strand, within OLJFJH_04940 at 979.432 kb on - strand, within OLJFJH_04940 at 979.464 kb on + strand, within OLJFJH_04940 at 979.464 kb on + strand, within OLJFJH_04940 at 979.716 kb on + strand, within OLJFJH_04940 at 979.716 kb on + strand, within OLJFJH_04940
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 977,746 - -1.2 977,964 - -1.9 977,976 - -0.0 977,980 - +1.2 978,074 - +1.0 978,089 + -0.2 978,089 + +0.2 978,089 + -2.4 978,089 + -1.1 978,089 + +0.3 978,089 + +0.0 978,089 + -0.3 978,089 + -0.8 978,090 - -0.7 978,090 - +1.2 978,090 - -2.2 978,090 - -0.9 978,142 - +1.4 978,179 - -3.3 978,235 + +2.2 978,235 + -0.9 978,236 - +1.9 978,236 - -0.6 978,236 - +1.2 978,236 - +2.6 978,252 + -3.7 978,252 + -0.4 978,252 + -1.9 978,253 - -0.4 978,513 + OLJFJH_04935 0.19 +1.1 978,715 + +0.9 978,715 + -2.6 978,767 + -0.1 978,767 + -0.4 978,767 + +2.0 978,767 + -0.2 978,767 + -1.0 978,767 + -0.1 978,767 + +0.5 978,767 + -0.7 978,768 - +0.8 978,768 - -2.7 978,768 - +0.1 978,768 - -0.4 978,911 + +1.4 978,923 + +0.6 978,924 - -0.3 978,956 - -2.1 979,040 - +0.4 979,312 + OLJFJH_04940 0.25 -1.1 979,313 - OLJFJH_04940 0.25 -0.7 979,432 - OLJFJH_04940 0.34 -5.0 979,464 + OLJFJH_04940 0.36 +0.3 979,464 + OLJFJH_04940 0.36 -1.5 979,716 + OLJFJH_04940 0.54 -0.8 979,716 + OLJFJH_04940 0.54 +0.1
Or see this region's nucleotide sequence