Strain Fitness in Erwinia amylovora T8 around OLJFJH_04850

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04840 and OLJFJH_04845 are separated by 87 nucleotidesOLJFJH_04845 and OLJFJH_04850 overlap by 10 nucleotidesOLJFJH_04850 and OLJFJH_04855 are separated by 606 nucleotides OLJFJH_04840: OLJFJH_04840 - cellulose synthase, at 957,258 to 959,357 _04840 OLJFJH_04845: OLJFJH_04845 - cellulose biosynthesis protein BcsQ, at 959,445 to 960,242 _04845 OLJFJH_04850: OLJFJH_04850 - cellulose biosynthesis protein BcsO, at 960,233 to 960,763 _04850 OLJFJH_04855: OLJFJH_04855 - dipeptide ABC transporter ATP-binding protein, at 961,370 to 962,371 _04855 Position (kb) 960 961Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 959.264 kb on + strandat 959.265 kb on - strandat 959.339 kb on - strandat 959.352 kb on - strandat 959.377 kb on - strandat 959.387 kb on + strandat 959.388 kb on - strandat 959.454 kb on - strandat 959.499 kb on + strandat 959.507 kb on + strandat 959.678 kb on + strand, within OLJFJH_04845at 959.679 kb on - strand, within OLJFJH_04845at 959.879 kb on + strand, within OLJFJH_04845at 959.909 kb on + strand, within OLJFJH_04845at 959.909 kb on + strand, within OLJFJH_04845at 960.123 kb on + strand, within OLJFJH_04845at 960.124 kb on - strand, within OLJFJH_04845at 960.124 kb on - strand, within OLJFJH_04845at 960.124 kb on - strand, within OLJFJH_04845at 960.149 kb on + strand, within OLJFJH_04845at 960.150 kb on - strand, within OLJFJH_04845at 960.216 kb on - strandat 960.235 kb on - strandat 960.454 kb on + strand, within OLJFJH_04850at 960.454 kb on + strand, within OLJFJH_04850at 960.455 kb on - strand, within OLJFJH_04850at 960.455 kb on - strand, within OLJFJH_04850at 960.607 kb on + strand, within OLJFJH_04850at 960.701 kb on - strand, within OLJFJH_04850at 960.767 kb on + strandat 960.826 kb on - strandat 960.826 kb on - strandat 960.911 kb on - strandat 960.915 kb on - strandat 960.954 kb on + strandat 961.018 kb on - strandat 961.249 kb on - strandat 961.273 kb on + strandat 961.338 kb on - strandat 961.442 kb on - strandat 961.454 kb on + strandat 961.454 kb on + strandat 961.454 kb on + strandat 961.455 kb on - strandat 961.455 kb on - strandat 961.640 kb on - strand, within OLJFJH_04855at 961.668 kb on + strand, within OLJFJH_04855at 961.668 kb on + strand, within OLJFJH_04855at 961.669 kb on - strand, within OLJFJH_04855at 961.693 kb on + strand, within OLJFJH_04855at 961.694 kb on - strand, within OLJFJH_04855at 961.731 kb on + strand, within OLJFJH_04855at 961.731 kb on + strand, within OLJFJH_04855at 961.732 kb on - strand, within OLJFJH_04855at 961.732 kb on - strand, within OLJFJH_04855at 961.732 kb on - strand, within OLJFJH_04855at 961.732 kb on - strand, within OLJFJH_04855

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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959,264 + +0.5
959,265 - +0.2
959,339 - +0.4
959,352 - -0.6
959,377 - +1.0
959,387 + -0.0
959,388 - -2.4
959,454 - -1.1
959,499 + -0.0
959,507 + +2.7
959,678 + OLJFJH_04845 0.29 -1.8
959,679 - OLJFJH_04845 0.29 +0.3
959,879 + OLJFJH_04845 0.54 +1.6
959,909 + OLJFJH_04845 0.58 +0.8
959,909 + OLJFJH_04845 0.58 +1.8
960,123 + OLJFJH_04845 0.85 +0.7
960,124 - OLJFJH_04845 0.85 +0.9
960,124 - OLJFJH_04845 0.85 +0.6
960,124 - OLJFJH_04845 0.85 +3.4
960,149 + OLJFJH_04845 0.88 +2.4
960,150 - OLJFJH_04845 0.88 +1.4
960,216 - -0.8
960,235 - +0.1
960,454 + OLJFJH_04850 0.42 +1.3
960,454 + OLJFJH_04850 0.42 +0.8
960,455 - OLJFJH_04850 0.42 +0.5
960,455 - OLJFJH_04850 0.42 -1.2
960,607 + OLJFJH_04850 0.70 +2.0
960,701 - OLJFJH_04850 0.88 +0.0
960,767 + +1.0
960,826 - +0.6
960,826 - +1.1
960,911 - +0.4
960,915 - +1.3
960,954 + +0.2
961,018 - +0.8
961,249 - +0.3
961,273 + -2.1
961,338 - +0.8
961,442 - -2.7
961,454 + -0.9
961,454 + +1.1
961,454 + +0.4
961,455 - -2.3
961,455 - +1.1
961,640 - OLJFJH_04855 0.27 -2.8
961,668 + OLJFJH_04855 0.30 -2.2
961,668 + OLJFJH_04855 0.30 +2.0
961,669 - OLJFJH_04855 0.30 +1.3
961,693 + OLJFJH_04855 0.32 -2.0
961,694 - OLJFJH_04855 0.32 -3.8
961,731 + OLJFJH_04855 0.36 -2.0
961,731 + OLJFJH_04855 0.36 +1.9
961,732 - OLJFJH_04855 0.36 +1.2
961,732 - OLJFJH_04855 0.36 +1.2
961,732 - OLJFJH_04855 0.36 -1.3
961,732 - OLJFJH_04855 0.36 +3.7

Or see this region's nucleotide sequence