Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04840 and OLJFJH_04845 are separated by 87 nucleotides OLJFJH_04845 and OLJFJH_04850 overlap by 10 nucleotides OLJFJH_04850 and OLJFJH_04855 are separated by 606 nucleotides
OLJFJH_04840: OLJFJH_04840 - cellulose synthase, at 957,258 to 959,357
_04840
OLJFJH_04845: OLJFJH_04845 - cellulose biosynthesis protein BcsQ, at 959,445 to 960,242
_04845
OLJFJH_04850: OLJFJH_04850 - cellulose biosynthesis protein BcsO, at 960,233 to 960,763
_04850
OLJFJH_04855: OLJFJH_04855 - dipeptide ABC transporter ATP-binding protein, at 961,370 to 962,371
_04855
Position (kb) 960
961 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 959.264 kb on + strand at 959.265 kb on - strand at 959.339 kb on - strand at 959.352 kb on - strand at 959.377 kb on - strand at 959.387 kb on + strand at 959.388 kb on - strand at 959.454 kb on - strand at 959.499 kb on + strand at 959.507 kb on + strand at 959.678 kb on + strand, within OLJFJH_04845 at 959.679 kb on - strand, within OLJFJH_04845 at 959.879 kb on + strand, within OLJFJH_04845 at 959.909 kb on + strand, within OLJFJH_04845 at 959.909 kb on + strand, within OLJFJH_04845 at 960.123 kb on + strand, within OLJFJH_04845 at 960.124 kb on - strand, within OLJFJH_04845 at 960.124 kb on - strand, within OLJFJH_04845 at 960.124 kb on - strand, within OLJFJH_04845 at 960.149 kb on + strand, within OLJFJH_04845 at 960.150 kb on - strand, within OLJFJH_04845 at 960.216 kb on - strand at 960.235 kb on - strand at 960.454 kb on + strand, within OLJFJH_04850 at 960.454 kb on + strand, within OLJFJH_04850 at 960.455 kb on - strand, within OLJFJH_04850 at 960.455 kb on - strand, within OLJFJH_04850 at 960.607 kb on + strand, within OLJFJH_04850 at 960.701 kb on - strand, within OLJFJH_04850 at 960.767 kb on + strand at 960.826 kb on - strand at 960.826 kb on - strand at 960.911 kb on - strand at 960.915 kb on - strand at 960.954 kb on + strand at 961.018 kb on - strand at 961.249 kb on - strand at 961.273 kb on + strand at 961.338 kb on - strand at 961.442 kb on - strand at 961.454 kb on + strand at 961.454 kb on + strand at 961.454 kb on + strand at 961.455 kb on - strand at 961.455 kb on - strand at 961.640 kb on - strand, within OLJFJH_04855 at 961.668 kb on + strand, within OLJFJH_04855 at 961.668 kb on + strand, within OLJFJH_04855 at 961.669 kb on - strand, within OLJFJH_04855 at 961.693 kb on + strand, within OLJFJH_04855 at 961.694 kb on - strand, within OLJFJH_04855 at 961.731 kb on + strand, within OLJFJH_04855 at 961.731 kb on + strand, within OLJFJH_04855 at 961.732 kb on - strand, within OLJFJH_04855 at 961.732 kb on - strand, within OLJFJH_04855 at 961.732 kb on - strand, within OLJFJH_04855 at 961.732 kb on - strand, within OLJFJH_04855
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 959,264 + +0.5 959,265 - +0.2 959,339 - +0.4 959,352 - -0.6 959,377 - +1.0 959,387 + -0.0 959,388 - -2.4 959,454 - -1.1 959,499 + -0.0 959,507 + +2.7 959,678 + OLJFJH_04845 0.29 -1.8 959,679 - OLJFJH_04845 0.29 +0.3 959,879 + OLJFJH_04845 0.54 +1.6 959,909 + OLJFJH_04845 0.58 +0.8 959,909 + OLJFJH_04845 0.58 +1.8 960,123 + OLJFJH_04845 0.85 +0.7 960,124 - OLJFJH_04845 0.85 +0.9 960,124 - OLJFJH_04845 0.85 +0.6 960,124 - OLJFJH_04845 0.85 +3.4 960,149 + OLJFJH_04845 0.88 +2.4 960,150 - OLJFJH_04845 0.88 +1.4 960,216 - -0.8 960,235 - +0.1 960,454 + OLJFJH_04850 0.42 +1.3 960,454 + OLJFJH_04850 0.42 +0.8 960,455 - OLJFJH_04850 0.42 +0.5 960,455 - OLJFJH_04850 0.42 -1.2 960,607 + OLJFJH_04850 0.70 +2.0 960,701 - OLJFJH_04850 0.88 +0.0 960,767 + +1.0 960,826 - +0.6 960,826 - +1.1 960,911 - +0.4 960,915 - +1.3 960,954 + +0.2 961,018 - +0.8 961,249 - +0.3 961,273 + -2.1 961,338 - +0.8 961,442 - -2.7 961,454 + -0.9 961,454 + +1.1 961,454 + +0.4 961,455 - -2.3 961,455 - +1.1 961,640 - OLJFJH_04855 0.27 -2.8 961,668 + OLJFJH_04855 0.30 -2.2 961,668 + OLJFJH_04855 0.30 +2.0 961,669 - OLJFJH_04855 0.30 +1.3 961,693 + OLJFJH_04855 0.32 -2.0 961,694 - OLJFJH_04855 0.32 -3.8 961,731 + OLJFJH_04855 0.36 -2.0 961,731 + OLJFJH_04855 0.36 +1.9 961,732 - OLJFJH_04855 0.36 +1.2 961,732 - OLJFJH_04855 0.36 +1.2 961,732 - OLJFJH_04855 0.36 -1.3 961,732 - OLJFJH_04855 0.36 +3.7
Or see this region's nucleotide sequence