Strain Fitness in Erwinia amylovora T8 around OLJFJH_04620

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04610 and OLJFJH_04615 are separated by 130 nucleotidesOLJFJH_04615 and OLJFJH_04620 are separated by 111 nucleotidesOLJFJH_04620 and OLJFJH_04625 overlap by 4 nucleotidesOLJFJH_04625 and OLJFJH_04630 are separated by 60 nucleotides OLJFJH_04610: OLJFJH_04610 - TIGR00645 family protein, at 899,385 to 899,882 _04610 OLJFJH_04615: OLJFJH_04615 - hypothetical protein, at 900,013 to 900,225 _04615 OLJFJH_04620: OLJFJH_04620 - Inversin, at 900,337 to 901,077 _04620 OLJFJH_04625: OLJFJH_04625 - hypothetical protein, at 901,074 to 901,310 _04625 OLJFJH_04630: OLJFJH_04630 - phospholipase, at 901,371 to 902,147 _04630 Position (kb) 900 901 902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 899.388 kb on + strandat 899.467 kb on + strand, within OLJFJH_04610at 899.467 kb on + strand, within OLJFJH_04610at 899.468 kb on - strand, within OLJFJH_04610at 899.468 kb on - strand, within OLJFJH_04610at 899.507 kb on + strand, within OLJFJH_04610at 899.508 kb on - strand, within OLJFJH_04610at 899.664 kb on + strand, within OLJFJH_04610at 899.721 kb on + strand, within OLJFJH_04610at 899.769 kb on + strand, within OLJFJH_04610at 899.770 kb on - strand, within OLJFJH_04610at 899.786 kb on + strand, within OLJFJH_04610at 899.786 kb on + strand, within OLJFJH_04610at 899.787 kb on - strand, within OLJFJH_04610at 899.824 kb on + strand, within OLJFJH_04610at 899.824 kb on + strand, within OLJFJH_04610at 899.825 kb on - strand, within OLJFJH_04610at 899.825 kb on - strand, within OLJFJH_04610at 899.825 kb on - strand, within OLJFJH_04610at 899.854 kb on + strandat 899.854 kb on + strandat 899.917 kb on - strandat 899.917 kb on - strandat 900.055 kb on - strand, within OLJFJH_04615at 900.129 kb on - strand, within OLJFJH_04615at 900.131 kb on - strand, within OLJFJH_04615at 900.203 kb on + strand, within OLJFJH_04615at 900.204 kb on - strandat 900.212 kb on + strandat 900.925 kb on + strand, within OLJFJH_04620at 901.125 kb on - strand, within OLJFJH_04625at 901.125 kb on - strand, within OLJFJH_04625at 901.161 kb on + strand, within OLJFJH_04625at 901.484 kb on + strand, within OLJFJH_04630at 901.575 kb on - strand, within OLJFJH_04630at 901.690 kb on - strand, within OLJFJH_04630at 901.690 kb on - strand, within OLJFJH_04630at 901.698 kb on - strand, within OLJFJH_04630at 901.904 kb on + strand, within OLJFJH_04630at 901.904 kb on + strand, within OLJFJH_04630at 901.938 kb on - strand, within OLJFJH_04630at 902.012 kb on - strand, within OLJFJH_04630

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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899,388 + +2.3
899,467 + OLJFJH_04610 0.16 -1.4
899,467 + OLJFJH_04610 0.16 -1.1
899,468 - OLJFJH_04610 0.17 +0.3
899,468 - OLJFJH_04610 0.17 +0.1
899,507 + OLJFJH_04610 0.24 -1.8
899,508 - OLJFJH_04610 0.25 +0.2
899,664 + OLJFJH_04610 0.56 -0.6
899,721 + OLJFJH_04610 0.67 +0.6
899,769 + OLJFJH_04610 0.77 +1.0
899,770 - OLJFJH_04610 0.77 -3.3
899,786 + OLJFJH_04610 0.81 -0.5
899,786 + OLJFJH_04610 0.81 +1.5
899,787 - OLJFJH_04610 0.81 -0.9
899,824 + OLJFJH_04610 0.88 -1.5
899,824 + OLJFJH_04610 0.88 +1.0
899,825 - OLJFJH_04610 0.88 -0.8
899,825 - OLJFJH_04610 0.88 +0.7
899,825 - OLJFJH_04610 0.88 -4.1
899,854 + -1.4
899,854 + -0.0
899,917 - -0.3
899,917 - +0.2
900,055 - OLJFJH_04615 0.20 +0.4
900,129 - OLJFJH_04615 0.54 -0.7
900,131 - OLJFJH_04615 0.55 -0.5
900,203 + OLJFJH_04615 0.89 +0.2
900,204 - -1.8
900,212 + -0.9
900,925 + OLJFJH_04620 0.79 +0.7
901,125 - OLJFJH_04625 0.22 +0.7
901,125 - OLJFJH_04625 0.22 +0.3
901,161 + OLJFJH_04625 0.37 -2.0
901,484 + OLJFJH_04630 0.15 -3.6
901,575 - OLJFJH_04630 0.26 +0.8
901,690 - OLJFJH_04630 0.41 -1.0
901,690 - OLJFJH_04630 0.41 +1.0
901,698 - OLJFJH_04630 0.42 +0.1
901,904 + OLJFJH_04630 0.69 +0.7
901,904 + OLJFJH_04630 0.69 +0.1
901,938 - OLJFJH_04630 0.73 +1.4
902,012 - OLJFJH_04630 0.82 +0.7

Or see this region's nucleotide sequence