Strain Fitness in Erwinia amylovora T8 around OLJFJH_04595

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04590 and OLJFJH_04595 are separated by 8 nucleotidesOLJFJH_04595 and OLJFJH_04600 are separated by 121 nucleotides OLJFJH_04590: OLJFJH_04590 - xanthine hydroxylase reductase, at 895,034 to 895,996 _04590 OLJFJH_04595: OLJFJH_04595 - molybdenum cofactor-independent xanthine hydroxylase subunit HpxD, at 896,005 to 897,039 _04595 OLJFJH_04600: OLJFJH_04600 - LysR family transcriptional regulator, at 897,161 to 898,075 _04600 Position (kb) 896 897 898Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 895.017 kb on + strandat 895.017 kb on + strandat 895.018 kb on - strandat 895.018 kb on - strandat 895.018 kb on - strandat 895.024 kb on - strandat 895.284 kb on - strand, within OLJFJH_04590at 895.284 kb on - strand, within OLJFJH_04590at 895.288 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.431 kb on + strand, within OLJFJH_04590at 895.432 kb on - strand, within OLJFJH_04590at 895.432 kb on - strand, within OLJFJH_04590at 895.432 kb on - strand, within OLJFJH_04590at 895.581 kb on + strand, within OLJFJH_04590at 895.581 kb on + strand, within OLJFJH_04590at 895.581 kb on + strand, within OLJFJH_04590at 895.582 kb on - strand, within OLJFJH_04590at 895.582 kb on - strand, within OLJFJH_04590at 895.582 kb on - strand, within OLJFJH_04590at 895.582 kb on - strand, within OLJFJH_04590at 895.582 kb on - strand, within OLJFJH_04590at 895.585 kb on - strand, within OLJFJH_04590at 895.676 kb on - strand, within OLJFJH_04590at 895.948 kb on + strandat 895.977 kb on - strandat 895.997 kb on - strandat 896.059 kb on + strandat 896.060 kb on - strandat 896.061 kb on + strandat 896.062 kb on - strandat 896.062 kb on - strandat 896.082 kb on + strandat 896.083 kb on - strandat 896.393 kb on + strand, within OLJFJH_04595at 896.393 kb on + strand, within OLJFJH_04595at 896.393 kb on + strand, within OLJFJH_04595at 896.393 kb on + strand, within OLJFJH_04595at 896.394 kb on - strand, within OLJFJH_04595at 896.394 kb on - strand, within OLJFJH_04595at 896.394 kb on - strand, within OLJFJH_04595at 896.398 kb on - strand, within OLJFJH_04595at 896.454 kb on - strand, within OLJFJH_04595at 896.694 kb on - strand, within OLJFJH_04595at 896.751 kb on + strand, within OLJFJH_04595at 896.752 kb on - strand, within OLJFJH_04595at 896.941 kb on - strandat 897.090 kb on + strandat 897.090 kb on + strandat 897.091 kb on - strandat 897.188 kb on + strandat 897.189 kb on - strandat 897.359 kb on + strand, within OLJFJH_04600at 897.359 kb on + strand, within OLJFJH_04600at 897.359 kb on + strand, within OLJFJH_04600at 897.359 kb on + strand, within OLJFJH_04600at 897.360 kb on - strand, within OLJFJH_04600at 897.420 kb on + strand, within OLJFJH_04600at 897.420 kb on + strand, within OLJFJH_04600at 897.420 kb on + strand, within OLJFJH_04600at 897.421 kb on - strand, within OLJFJH_04600at 897.421 kb on - strand, within OLJFJH_04600at 897.421 kb on - strand, within OLJFJH_04600at 897.421 kb on - strand, within OLJFJH_04600at 897.421 kb on - strand, within OLJFJH_04600at 897.516 kb on - strand, within OLJFJH_04600at 897.544 kb on - strand, within OLJFJH_04600at 897.739 kb on + strand, within OLJFJH_04600at 897.739 kb on + strand, within OLJFJH_04600at 897.739 kb on + strand, within OLJFJH_04600at 897.740 kb on - strand, within OLJFJH_04600at 897.740 kb on - strand, within OLJFJH_04600at 897.740 kb on - strand, within OLJFJH_04600at 897.740 kb on - strand, within OLJFJH_04600at 897.742 kb on + strand, within OLJFJH_04600at 897.742 kb on + strand, within OLJFJH_04600at 897.742 kb on + strand, within OLJFJH_04600

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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895,017 + +0.7
895,017 + -2.6
895,018 - -0.7
895,018 - +0.3
895,018 - +0.9
895,024 - -0.6
895,284 - OLJFJH_04590 0.26 -4.4
895,284 - OLJFJH_04590 0.26 +2.6
895,288 + OLJFJH_04590 0.26 -2.0
895,431 + OLJFJH_04590 0.41 -0.2
895,431 + OLJFJH_04590 0.41 -3.1
895,431 + OLJFJH_04590 0.41 -0.6
895,431 + OLJFJH_04590 0.41 -0.9
895,431 + OLJFJH_04590 0.41 -0.7
895,431 + OLJFJH_04590 0.41 +0.3
895,431 + OLJFJH_04590 0.41 -0.2
895,431 + OLJFJH_04590 0.41 +0.1
895,432 - OLJFJH_04590 0.41 +0.7
895,432 - OLJFJH_04590 0.41 -3.4
895,432 - OLJFJH_04590 0.41 -0.2
895,581 + OLJFJH_04590 0.57 -0.4
895,581 + OLJFJH_04590 0.57 +0.7
895,581 + OLJFJH_04590 0.57 +0.6
895,582 - OLJFJH_04590 0.57 +1.2
895,582 - OLJFJH_04590 0.57 +0.7
895,582 - OLJFJH_04590 0.57 +0.8
895,582 - OLJFJH_04590 0.57 -0.3
895,582 - OLJFJH_04590 0.57 -0.8
895,585 - OLJFJH_04590 0.57 -0.8
895,676 - OLJFJH_04590 0.67 -0.1
895,948 + -0.7
895,977 - -3.3
895,997 - +0.1
896,059 + +2.1
896,060 - +0.0
896,061 + -0.4
896,062 - -2.1
896,062 - -1.1
896,082 + -0.9
896,083 - -1.0
896,393 + OLJFJH_04595 0.37 -0.2
896,393 + OLJFJH_04595 0.37 +2.5
896,393 + OLJFJH_04595 0.37 -1.9
896,393 + OLJFJH_04595 0.37 +0.4
896,394 - OLJFJH_04595 0.38 -1.9
896,394 - OLJFJH_04595 0.38 +1.7
896,394 - OLJFJH_04595 0.38 +0.7
896,398 - OLJFJH_04595 0.38 -0.2
896,454 - OLJFJH_04595 0.43 +0.4
896,694 - OLJFJH_04595 0.67 +3.0
896,751 + OLJFJH_04595 0.72 -0.4
896,752 - OLJFJH_04595 0.72 +3.4
896,941 - +0.6
897,090 + -0.8
897,090 + +1.6
897,091 - +0.3
897,188 + +0.8
897,189 - -1.5
897,359 + OLJFJH_04600 0.22 +0.0
897,359 + OLJFJH_04600 0.22 -0.9
897,359 + OLJFJH_04600 0.22 +0.2
897,359 + OLJFJH_04600 0.22 +0.4
897,360 - OLJFJH_04600 0.22 -0.7
897,420 + OLJFJH_04600 0.28 -1.7
897,420 + OLJFJH_04600 0.28 -0.9
897,420 + OLJFJH_04600 0.28 +0.9
897,421 - OLJFJH_04600 0.28 +1.7
897,421 - OLJFJH_04600 0.28 -0.9
897,421 - OLJFJH_04600 0.28 -1.6
897,421 - OLJFJH_04600 0.28 +0.0
897,421 - OLJFJH_04600 0.28 +0.3
897,516 - OLJFJH_04600 0.39 -0.4
897,544 - OLJFJH_04600 0.42 +0.4
897,739 + OLJFJH_04600 0.63 +0.4
897,739 + OLJFJH_04600 0.63 +0.8
897,739 + OLJFJH_04600 0.63 +1.5
897,740 - OLJFJH_04600 0.63 -1.0
897,740 - OLJFJH_04600 0.63 -2.1
897,740 - OLJFJH_04600 0.63 +0.4
897,740 - OLJFJH_04600 0.63 +0.0
897,742 + OLJFJH_04600 0.63 -0.2
897,742 + OLJFJH_04600 0.63 -0.2
897,742 + OLJFJH_04600 0.63 +0.0

Or see this region's nucleotide sequence