Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04555 and OLJFJH_04560 are separated by 83 nucleotides OLJFJH_04560 and OLJFJH_04565 are separated by 546 nucleotides
OLJFJH_04555: OLJFJH_04555 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 888,215 to 889,057
_04555
OLJFJH_04560: OLJFJH_04560 - ribonuclease Z, at 889,141 to 890,055
_04560
OLJFJH_04565: OLJFJH_04565 - Glutathione oxidoreductase, at 890,602 to 891,957
_04565
Position (kb) 889
890
891 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 888.154 kb on + strand at 888.155 kb on - strand at 888.155 kb on - strand at 888.155 kb on - strand at 888.155 kb on - strand at 888.320 kb on + strand, within OLJFJH_04555 at 888.320 kb on + strand, within OLJFJH_04555 at 888.415 kb on + strand, within OLJFJH_04555 at 888.434 kb on - strand, within OLJFJH_04555 at 888.434 kb on - strand, within OLJFJH_04555 at 888.434 kb on - strand, within OLJFJH_04555 at 888.455 kb on + strand, within OLJFJH_04555 at 888.555 kb on + strand, within OLJFJH_04555 at 888.555 kb on + strand, within OLJFJH_04555 at 888.556 kb on - strand, within OLJFJH_04555 at 888.693 kb on + strand, within OLJFJH_04555 at 888.713 kb on + strand, within OLJFJH_04555 at 888.714 kb on - strand, within OLJFJH_04555 at 888.714 kb on - strand, within OLJFJH_04555 at 888.832 kb on + strand, within OLJFJH_04555 at 888.833 kb on - strand, within OLJFJH_04555 at 888.833 kb on - strand, within OLJFJH_04555 at 888.944 kb on - strand, within OLJFJH_04555 at 888.997 kb on + strand at 889.220 kb on + strand at 889.221 kb on - strand at 889.221 kb on - strand at 889.532 kb on + strand, within OLJFJH_04560 at 889.538 kb on + strand, within OLJFJH_04560 at 889.539 kb on - strand, within OLJFJH_04560 at 889.539 kb on - strand, within OLJFJH_04560 at 889.681 kb on + strand, within OLJFJH_04560 at 889.682 kb on - strand, within OLJFJH_04560 at 889.768 kb on + strand, within OLJFJH_04560 at 889.784 kb on + strand, within OLJFJH_04560 at 889.851 kb on + strand, within OLJFJH_04560 at 889.852 kb on - strand, within OLJFJH_04560 at 890.076 kb on + strand at 890.120 kb on + strand at 890.126 kb on + strand at 890.127 kb on - strand at 890.137 kb on - strand at 890.195 kb on + strand at 890.196 kb on - strand at 890.238 kb on - strand at 890.252 kb on + strand at 890.253 kb on - strand at 890.274 kb on + strand at 890.285 kb on + strand at 890.366 kb on + strand at 890.402 kb on + strand at 890.427 kb on - strand at 890.427 kb on - strand at 890.486 kb on - strand at 890.518 kb on - strand at 890.518 kb on - strand at 890.615 kb on - strand at 890.621 kb on - strand at 890.677 kb on + strand at 890.677 kb on + strand at 890.678 kb on - strand at 890.794 kb on - strand, within OLJFJH_04565 at 890.797 kb on + strand, within OLJFJH_04565 at 890.797 kb on + strand, within OLJFJH_04565 at 890.798 kb on - strand, within OLJFJH_04565 at 890.798 kb on - strand, within OLJFJH_04565 at 890.820 kb on + strand, within OLJFJH_04565 at 890.821 kb on - strand, within OLJFJH_04565 at 890.821 kb on - strand, within OLJFJH_04565 at 890.839 kb on - strand, within OLJFJH_04565 at 890.850 kb on - strand, within OLJFJH_04565 at 890.889 kb on + strand, within OLJFJH_04565 at 890.890 kb on - strand, within OLJFJH_04565 at 890.906 kb on + strand, within OLJFJH_04565 at 890.907 kb on - strand, within OLJFJH_04565 at 890.907 kb on - strand, within OLJFJH_04565 at 890.920 kb on - strand, within OLJFJH_04565 at 891.003 kb on + strand, within OLJFJH_04565
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 888,154 + +0.9 888,155 - -2.6 888,155 - +0.2 888,155 - -1.0 888,155 - +0.3 888,320 + OLJFJH_04555 0.12 -0.5 888,320 + OLJFJH_04555 0.12 -0.4 888,415 + OLJFJH_04555 0.24 +0.2 888,434 - OLJFJH_04555 0.26 -1.6 888,434 - OLJFJH_04555 0.26 +1.1 888,434 - OLJFJH_04555 0.26 +1.8 888,455 + OLJFJH_04555 0.28 -0.5 888,555 + OLJFJH_04555 0.40 +0.0 888,555 + OLJFJH_04555 0.40 -0.2 888,556 - OLJFJH_04555 0.40 +0.4 888,693 + OLJFJH_04555 0.57 +0.7 888,713 + OLJFJH_04555 0.59 -2.1 888,714 - OLJFJH_04555 0.59 -1.3 888,714 - OLJFJH_04555 0.59 -2.4 888,832 + OLJFJH_04555 0.73 -2.6 888,833 - OLJFJH_04555 0.73 -0.9 888,833 - OLJFJH_04555 0.73 -0.3 888,944 - OLJFJH_04555 0.86 -3.7 888,997 + -1.6 889,220 + -0.8 889,221 - -0.4 889,221 - -0.9 889,532 + OLJFJH_04560 0.43 -0.1 889,538 + OLJFJH_04560 0.43 +0.5 889,539 - OLJFJH_04560 0.43 +6.2 889,539 - OLJFJH_04560 0.43 -0.6 889,681 + OLJFJH_04560 0.59 +0.9 889,682 - OLJFJH_04560 0.59 -0.4 889,768 + OLJFJH_04560 0.69 +0.4 889,784 + OLJFJH_04560 0.70 -0.9 889,851 + OLJFJH_04560 0.78 +1.1 889,852 - OLJFJH_04560 0.78 -0.1 890,076 + -0.8 890,120 + -0.2 890,126 + -2.5 890,127 - -1.8 890,137 - -0.7 890,195 + +0.2 890,196 - -1.9 890,238 - +0.3 890,252 + +0.2 890,253 - +1.6 890,274 + +0.9 890,285 + -4.1 890,366 + +0.6 890,402 + +0.3 890,427 - +0.8 890,427 - -3.0 890,486 - -0.9 890,518 - +0.3 890,518 - -1.3 890,615 - +0.2 890,621 - +2.0 890,677 + -0.1 890,677 + -0.4 890,678 - +0.4 890,794 - OLJFJH_04565 0.14 -0.6 890,797 + OLJFJH_04565 0.14 -2.1 890,797 + OLJFJH_04565 0.14 -1.0 890,798 - OLJFJH_04565 0.14 -0.0 890,798 - OLJFJH_04565 0.14 -0.3 890,820 + OLJFJH_04565 0.16 -1.3 890,821 - OLJFJH_04565 0.16 -2.1 890,821 - OLJFJH_04565 0.16 -0.6 890,839 - OLJFJH_04565 0.17 -1.5 890,850 - OLJFJH_04565 0.18 -2.1 890,889 + OLJFJH_04565 0.21 -0.5 890,890 - OLJFJH_04565 0.21 -1.0 890,906 + OLJFJH_04565 0.22 -0.8 890,907 - OLJFJH_04565 0.22 +1.0 890,907 - OLJFJH_04565 0.22 -2.9 890,920 - OLJFJH_04565 0.23 -1.4 891,003 + OLJFJH_04565 0.30 +1.3
Or see this region's nucleotide sequence