Strain Fitness in Erwinia amylovora T8 around OLJFJH_03955

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03945 and OLJFJH_03950 are separated by 138 nucleotidesOLJFJH_03950 and OLJFJH_03955 are separated by 56 nucleotidesOLJFJH_03955 and OLJFJH_03960 are separated by 0 nucleotidesOLJFJH_03960 and OLJFJH_03965 are separated by 126 nucleotides OLJFJH_03945: OLJFJH_03945 - peptidylprolyl isomerase, at 749,013 to 749,555 _03945 OLJFJH_03950: OLJFJH_03950 - DUF2387 domain-containing protein, at 749,694 to 749,888 _03950 OLJFJH_03955: OLJFJH_03955 - glutathione-regulated potassium-efflux system protein KefB, at 749,945 to 751,750 _03955 OLJFJH_03960: OLJFJH_03960 - glutathione-regulated potassium-efflux system ancillary protein KefG, at 751,751 to 752,302 _03960 OLJFJH_03965: OLJFJH_03965 - ABC transporter ATP-binding protein, at 752,429 to 754,330 _03965 Position (kb) 749 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 748.984 kb on + strandat 748.984 kb on + strandat 749.315 kb on + strand, within OLJFJH_03945at 749.518 kb on + strandat 749.519 kb on - strandat 749.593 kb on + strandat 749.593 kb on + strandat 749.594 kb on - strandat 749.666 kb on - strandat 749.688 kb on + strandat 749.807 kb on + strand, within OLJFJH_03950at 749.873 kb on + strandat 749.883 kb on - strandat 749.883 kb on - strandat 749.883 kb on - strandat 749.889 kb on - strandat 749.946 kb on + strandat 749.947 kb on - strandat 750.089 kb on - strandat 750.089 kb on - strandat 750.089 kb on - strandat 750.089 kb on - strandat 750.190 kb on + strand, within OLJFJH_03955at 750.409 kb on - strand, within OLJFJH_03955at 750.411 kb on + strand, within OLJFJH_03955at 750.473 kb on - strand, within OLJFJH_03955at 750.823 kb on - strand, within OLJFJH_03955at 750.888 kb on + strand, within OLJFJH_03955at 750.888 kb on + strand, within OLJFJH_03955at 750.888 kb on + strand, within OLJFJH_03955at 750.889 kb on - strand, within OLJFJH_03955at 750.889 kb on - strand, within OLJFJH_03955at 751.018 kb on + strand, within OLJFJH_03955at 751.379 kb on - strand, within OLJFJH_03955at 751.543 kb on + strand, within OLJFJH_03955at 751.544 kb on - strand, within OLJFJH_03955at 751.611 kb on - strandat 751.611 kb on - strandat 751.647 kb on + strandat 751.648 kb on - strandat 751.713 kb on + strandat 751.713 kb on + strandat 751.713 kb on + strandat 751.714 kb on - strandat 751.715 kb on + strandat 751.715 kb on + strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.716 kb on - strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.752 kb on + strandat 751.794 kb on + strandat 751.846 kb on - strand, within OLJFJH_03960at 751.910 kb on - strand, within OLJFJH_03960at 751.910 kb on - strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.085 kb on + strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.086 kb on - strand, within OLJFJH_03960at 752.089 kb on + strand, within OLJFJH_03960at 752.090 kb on - strand, within OLJFJH_03960at 752.091 kb on + strand, within OLJFJH_03960at 752.091 kb on + strand, within OLJFJH_03960at 752.092 kb on - strand, within OLJFJH_03960at 752.181 kb on + strand, within OLJFJH_03960at 752.271 kb on + strandat 752.271 kb on + strandat 752.271 kb on + strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.272 kb on - strandat 752.429 kb on - strandat 752.437 kb on - strandat 752.437 kb on - strandat 752.569 kb on + strandat 752.570 kb on - strandat 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.675 kb on + strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965at 752.676 kb on - strand, within OLJFJH_03965

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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748,984 + +0.5
748,984 + +0.9
749,315 + OLJFJH_03945 0.56 -1.5
749,518 + -2.4
749,519 - -1.7
749,593 + +2.3
749,593 + -0.1
749,594 - -1.4
749,666 - +0.1
749,688 + -0.1
749,807 + OLJFJH_03950 0.58 -3.0
749,873 + +0.1
749,883 - +1.2
749,883 - -1.6
749,883 - +2.1
749,889 - -2.0
749,946 + +0.6
749,947 - -2.1
750,089 - +1.4
750,089 - -2.7
750,089 - +1.3
750,089 - +1.2
750,190 + OLJFJH_03955 0.14 +2.1
750,409 - OLJFJH_03955 0.26 -0.1
750,411 + OLJFJH_03955 0.26 +1.5
750,473 - OLJFJH_03955 0.29 -0.0
750,823 - OLJFJH_03955 0.49 +1.2
750,888 + OLJFJH_03955 0.52 -0.4
750,888 + OLJFJH_03955 0.52 +1.4
750,888 + OLJFJH_03955 0.52 -1.4
750,889 - OLJFJH_03955 0.52 +1.4
750,889 - OLJFJH_03955 0.52 -0.9
751,018 + OLJFJH_03955 0.59 +2.7
751,379 - OLJFJH_03955 0.79 -1.6
751,543 + OLJFJH_03955 0.88 +0.8
751,544 - OLJFJH_03955 0.89 +0.8
751,611 - +0.4
751,611 - +1.1
751,647 + +0.3
751,648 - -2.0
751,713 + -0.2
751,713 + -3.2
751,713 + -1.9
751,714 - +0.1
751,715 + +0.3
751,715 + +0.5
751,716 - -0.5
751,716 - +0.2
751,716 - -0.1
751,716 - +1.2
751,752 + -0.3
751,752 + -0.8
751,752 + -1.6
751,752 + +0.3
751,752 + -1.4
751,794 + -0.3
751,846 - OLJFJH_03960 0.17 +0.1
751,910 - OLJFJH_03960 0.29 -1.2
751,910 - OLJFJH_03960 0.29 -0.9
752,085 + OLJFJH_03960 0.61 -0.9
752,085 + OLJFJH_03960 0.61 +0.5
752,085 + OLJFJH_03960 0.61 +0.4
752,086 - OLJFJH_03960 0.61 -0.1
752,086 - OLJFJH_03960 0.61 +0.9
752,086 - OLJFJH_03960 0.61 -0.7
752,089 + OLJFJH_03960 0.61 +0.8
752,090 - OLJFJH_03960 0.61 +1.4
752,091 + OLJFJH_03960 0.62 -0.2
752,091 + OLJFJH_03960 0.62 -0.3
752,092 - OLJFJH_03960 0.62 -0.1
752,181 + OLJFJH_03960 0.78 -0.4
752,271 + -0.5
752,271 + -0.6
752,271 + +1.0
752,272 - -0.6
752,272 - +0.4
752,272 - +0.2
752,272 - -0.3
752,272 - -0.1
752,429 - -1.7
752,437 - +0.6
752,437 - -0.7
752,569 + +0.8
752,570 - +0.0
752,675 + OLJFJH_03965 0.13 -2.4
752,675 + OLJFJH_03965 0.13 -2.6
752,675 + OLJFJH_03965 0.13 +0.0
752,675 + OLJFJH_03965 0.13 +0.0
752,676 - OLJFJH_03965 0.13 +1.7
752,676 - OLJFJH_03965 0.13 -2.4
752,676 - OLJFJH_03965 0.13 +1.0

Or see this region's nucleotide sequence