Strain Fitness in Erwinia amylovora T8 around OLJFJH_03700

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03690 and OLJFJH_03695 overlap by 17 nucleotidesOLJFJH_03695 and OLJFJH_03700 overlap by 20 nucleotidesOLJFJH_03700 and OLJFJH_03705 overlap by 29 nucleotides OLJFJH_03690: OLJFJH_03690 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 715,809 to 716,381 _03690 OLJFJH_03695: OLJFJH_03695 - DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains, at 716,365 to 716,973 _03695 OLJFJH_03700: OLJFJH_03700 - DUF494 domain-containing protein, at 716,954 to 717,427 _03700 OLJFJH_03705: OLJFJH_03705 - DNA-protecting protein DprA, at 717,399 to 718,523 _03705 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 716.399 kb on - strandat 716.711 kb on - strand, within OLJFJH_03695at 716.761 kb on - strand, within OLJFJH_03695at 717.100 kb on + strand, within OLJFJH_03700at 717.101 kb on - strand, within OLJFJH_03700at 717.164 kb on - strand, within OLJFJH_03700at 717.210 kb on + strand, within OLJFJH_03700at 717.210 kb on + strand, within OLJFJH_03700at 717.306 kb on + strand, within OLJFJH_03700at 717.306 kb on + strand, within OLJFJH_03700at 717.306 kb on + strand, within OLJFJH_03700at 717.393 kb on + strandat 717.393 kb on + strandat 717.393 kb on + strandat 717.393 kb on + strandat 717.394 kb on - strandat 717.394 kb on - strandat 717.394 kb on - strandat 717.394 kb on - strandat 717.394 kb on - strandat 717.394 kb on - strandat 717.404 kb on + strandat 717.408 kb on + strandat 717.408 kb on + strandat 717.409 kb on - strandat 717.409 kb on - strandat 717.409 kb on - strandat 717.409 kb on - strandat 717.416 kb on + strandat 717.416 kb on + strandat 717.416 kb on + strandat 717.417 kb on - strandat 717.417 kb on - strandat 717.417 kb on - strandat 717.463 kb on - strandat 717.573 kb on + strand, within OLJFJH_03705at 717.646 kb on - strand, within OLJFJH_03705at 717.689 kb on + strand, within OLJFJH_03705at 717.690 kb on - strand, within OLJFJH_03705at 717.690 kb on - strand, within OLJFJH_03705at 717.692 kb on + strand, within OLJFJH_03705at 717.693 kb on - strand, within OLJFJH_03705at 717.693 kb on - strand, within OLJFJH_03705at 717.695 kb on + strand, within OLJFJH_03705at 717.695 kb on + strand, within OLJFJH_03705at 717.696 kb on - strand, within OLJFJH_03705at 717.696 kb on - strand, within OLJFJH_03705at 717.696 kb on - strand, within OLJFJH_03705at 717.782 kb on - strand, within OLJFJH_03705at 717.849 kb on + strand, within OLJFJH_03705at 717.849 kb on + strand, within OLJFJH_03705at 717.850 kb on - strand, within OLJFJH_03705at 717.881 kb on + strand, within OLJFJH_03705at 717.881 kb on + strand, within OLJFJH_03705at 718.082 kb on + strand, within OLJFJH_03705at 718.083 kb on - strand, within OLJFJH_03705at 718.086 kb on + strand, within OLJFJH_03705at 718.086 kb on + strand, within OLJFJH_03705at 718.087 kb on - strand, within OLJFJH_03705at 718.087 kb on - strand, within OLJFJH_03705at 718.087 kb on - strand, within OLJFJH_03705at 718.087 kb on - strand, within OLJFJH_03705at 718.087 kb on - strand, within OLJFJH_03705at 718.087 kb on - strand, within OLJFJH_03705at 718.107 kb on - strand, within OLJFJH_03705at 718.110 kb on + strand, within OLJFJH_03705at 718.119 kb on + strand, within OLJFJH_03705at 718.119 kb on + strand, within OLJFJH_03705at 718.120 kb on - strand, within OLJFJH_03705at 718.163 kb on - strand, within OLJFJH_03705at 718.213 kb on - strand, within OLJFJH_03705

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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716,399 - +2.5
716,711 - OLJFJH_03695 0.57 +0.9
716,761 - OLJFJH_03695 0.65 -3.6
717,100 + OLJFJH_03700 0.31 +3.6
717,101 - OLJFJH_03700 0.31 +0.7
717,164 - OLJFJH_03700 0.44 -3.3
717,210 + OLJFJH_03700 0.54 +4.5
717,210 + OLJFJH_03700 0.54 +0.1
717,306 + OLJFJH_03700 0.74 -1.0
717,306 + OLJFJH_03700 0.74 -1.1
717,306 + OLJFJH_03700 0.74 +0.1
717,393 + -0.5
717,393 + -1.1
717,393 + +1.6
717,393 + -3.6
717,394 - -0.2
717,394 - -1.5
717,394 - -1.5
717,394 - +0.1
717,394 - +0.1
717,394 - +0.6
717,404 + -2.5
717,408 + +0.1
717,408 + +1.8
717,409 - -1.8
717,409 - -1.0
717,409 - -1.1
717,409 - -2.6
717,416 + +0.2
717,416 + +1.5
717,416 + -2.6
717,417 - -1.8
717,417 - +1.0
717,417 - -1.2
717,463 - +0.7
717,573 + OLJFJH_03705 0.15 -0.8
717,646 - OLJFJH_03705 0.22 -0.9
717,689 + OLJFJH_03705 0.26 +0.0
717,690 - OLJFJH_03705 0.26 +0.3
717,690 - OLJFJH_03705 0.26 -0.4
717,692 + OLJFJH_03705 0.26 +0.7
717,693 - OLJFJH_03705 0.26 -2.9
717,693 - OLJFJH_03705 0.26 +1.0
717,695 + OLJFJH_03705 0.26 +0.5
717,695 + OLJFJH_03705 0.26 -0.2
717,696 - OLJFJH_03705 0.26 +0.2
717,696 - OLJFJH_03705 0.26 -0.4
717,696 - OLJFJH_03705 0.26 -1.3
717,782 - OLJFJH_03705 0.34 +1.1
717,849 + OLJFJH_03705 0.40 +0.2
717,849 + OLJFJH_03705 0.40 -3.6
717,850 - OLJFJH_03705 0.40 +0.4
717,881 + OLJFJH_03705 0.43 +1.6
717,881 + OLJFJH_03705 0.43 +0.5
718,082 + OLJFJH_03705 0.61 +0.9
718,083 - OLJFJH_03705 0.61 -1.9
718,086 + OLJFJH_03705 0.61 +1.3
718,086 + OLJFJH_03705 0.61 -2.3
718,087 - OLJFJH_03705 0.61 +1.5
718,087 - OLJFJH_03705 0.61 +0.8
718,087 - OLJFJH_03705 0.61 -1.9
718,087 - OLJFJH_03705 0.61 +0.2
718,087 - OLJFJH_03705 0.61 -3.1
718,087 - OLJFJH_03705 0.61 -3.7
718,107 - OLJFJH_03705 0.63 -1.8
718,110 + OLJFJH_03705 0.63 -0.5
718,119 + OLJFJH_03705 0.64 -0.8
718,119 + OLJFJH_03705 0.64 -2.2
718,120 - OLJFJH_03705 0.64 -2.7
718,163 - OLJFJH_03705 0.68 +0.7
718,213 - OLJFJH_03705 0.72 +0.8

Or see this region's nucleotide sequence