Strain Fitness in Erwinia amylovora T8 around OLJFJH_03385

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03375 and OLJFJH_03380 are separated by 283 nucleotidesOLJFJH_03380 and OLJFJH_03385 are separated by 43 nucleotidesOLJFJH_03385 and OLJFJH_03390 are separated by 102 nucleotidesOLJFJH_03390 and OLJFJH_03395 are separated by 440 nucleotides OLJFJH_03375: OLJFJH_03375 - permease, at 645,627 to 647,159 _03375 OLJFJH_03380: OLJFJH_03380 - glutathione S-transferase, at 647,443 to 648,105 _03380 OLJFJH_03385: OLJFJH_03385 - redox-sensitive transcriptional activator SoxR, at 648,149 to 648,616 _03385 OLJFJH_03390: OLJFJH_03390 - superoxide response transcriptional regulator SoxS, at 648,719 to 649,144 _03390 OLJFJH_03395: OLJFJH_03395 - hypothetical protein, at 649,585 to 649,740 _03395 Position (kb) 648 649Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 647.236 kb on + strandat 647.266 kb on + strandat 647.267 kb on - strandat 647.334 kb on - strandat 647.334 kb on - strandat 647.343 kb on + strandat 647.343 kb on + strandat 647.344 kb on - strandat 647.344 kb on - strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.345 kb on + strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.346 kb on - strandat 647.683 kb on - strand, within OLJFJH_03380at 647.684 kb on + strand, within OLJFJH_03380at 647.684 kb on + strand, within OLJFJH_03380at 647.684 kb on + strand, within OLJFJH_03380at 647.685 kb on - strand, within OLJFJH_03380at 647.685 kb on - strand, within OLJFJH_03380at 647.685 kb on - strand, within OLJFJH_03380at 647.811 kb on - strand, within OLJFJH_03380at 647.811 kb on - strand, within OLJFJH_03380at 647.833 kb on + strand, within OLJFJH_03380at 647.834 kb on - strand, within OLJFJH_03380at 647.834 kb on - strand, within OLJFJH_03380at 647.880 kb on - strand, within OLJFJH_03380at 647.880 kb on - strand, within OLJFJH_03380at 648.015 kb on - strand, within OLJFJH_03380at 648.015 kb on - strand, within OLJFJH_03380at 648.021 kb on + strand, within OLJFJH_03380at 648.021 kb on + strand, within OLJFJH_03380at 648.116 kb on + strandat 648.141 kb on - strandat 648.143 kb on - strandat 648.214 kb on + strand, within OLJFJH_03385at 648.214 kb on + strand, within OLJFJH_03385at 648.214 kb on + strand, within OLJFJH_03385at 648.299 kb on - strand, within OLJFJH_03385at 648.359 kb on - strand, within OLJFJH_03385at 648.376 kb on - strand, within OLJFJH_03385at 648.507 kb on - strand, within OLJFJH_03385at 648.627 kb on - strandat 648.636 kb on - strandat 648.650 kb on - strandat 648.651 kb on + strandat 648.651 kb on + strandat 648.652 kb on - strandat 648.718 kb on + strandat 648.718 kb on + strandat 648.719 kb on - strandat 648.719 kb on - strandat 648.763 kb on + strand, within OLJFJH_03390at 648.828 kb on + strand, within OLJFJH_03390at 648.828 kb on + strand, within OLJFJH_03390at 648.829 kb on - strand, within OLJFJH_03390at 648.872 kb on + strand, within OLJFJH_03390at 648.873 kb on - strand, within OLJFJH_03390at 648.875 kb on - strand, within OLJFJH_03390at 648.892 kb on - strand, within OLJFJH_03390at 648.953 kb on + strand, within OLJFJH_03390at 648.953 kb on + strand, within OLJFJH_03390at 648.954 kb on - strand, within OLJFJH_03390at 649.027 kb on + strand, within OLJFJH_03390at 649.028 kb on - strand, within OLJFJH_03390at 649.030 kb on + strand, within OLJFJH_03390at 649.050 kb on + strand, within OLJFJH_03390at 649.142 kb on + strandat 649.142 kb on + strandat 649.143 kb on - strandat 649.143 kb on - strandat 649.143 kb on - strandat 649.338 kb on + strandat 649.413 kb on - strandat 649.435 kb on + strandat 649.435 kb on + strandat 649.436 kb on - strandat 649.436 kb on - strandat 649.436 kb on - strandat 649.583 kb on + strandat 649.584 kb on - strandat 649.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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647,236 + +2.3
647,266 + +0.7
647,267 - -0.5
647,334 - +0.2
647,334 - -2.6
647,343 + +0.6
647,343 + -1.8
647,344 - +0.0
647,344 - +0.2
647,345 + -0.1
647,345 + -0.5
647,345 + +0.5
647,345 + -0.5
647,345 + +0.5
647,345 + -0.4
647,346 - +0.7
647,346 - -2.7
647,346 - +0.5
647,346 - -0.0
647,346 - +1.5
647,683 - OLJFJH_03380 0.36 +0.4
647,684 + OLJFJH_03380 0.36 -0.9
647,684 + OLJFJH_03380 0.36 +1.2
647,684 + OLJFJH_03380 0.36 -0.6
647,685 - OLJFJH_03380 0.37 +0.0
647,685 - OLJFJH_03380 0.37 -1.5
647,685 - OLJFJH_03380 0.37 -2.3
647,811 - OLJFJH_03380 0.56 -1.2
647,811 - OLJFJH_03380 0.56 +0.7
647,833 + OLJFJH_03380 0.59 -0.7
647,834 - OLJFJH_03380 0.59 -0.4
647,834 - OLJFJH_03380 0.59 -0.6
647,880 - OLJFJH_03380 0.66 +0.3
647,880 - OLJFJH_03380 0.66 +1.2
648,015 - OLJFJH_03380 0.86 -1.9
648,015 - OLJFJH_03380 0.86 +2.2
648,021 + OLJFJH_03380 0.87 +0.3
648,021 + OLJFJH_03380 0.87 -0.3
648,116 + +1.2
648,141 - -2.7
648,143 - -0.7
648,214 + OLJFJH_03385 0.14 -0.5
648,214 + OLJFJH_03385 0.14 -0.1
648,214 + OLJFJH_03385 0.14 +1.8
648,299 - OLJFJH_03385 0.32 +0.7
648,359 - OLJFJH_03385 0.45 +1.7
648,376 - OLJFJH_03385 0.49 +0.9
648,507 - OLJFJH_03385 0.76 -2.3
648,627 - -4.0
648,636 - +0.3
648,650 - -0.4
648,651 + +0.7
648,651 + +0.1
648,652 - +0.3
648,718 + -3.3
648,718 + -0.8
648,719 - -1.1
648,719 - -1.0
648,763 + OLJFJH_03390 0.10 +0.4
648,828 + OLJFJH_03390 0.26 -4.2
648,828 + OLJFJH_03390 0.26 +0.3
648,829 - OLJFJH_03390 0.26 +0.5
648,872 + OLJFJH_03390 0.36 +0.6
648,873 - OLJFJH_03390 0.36 -0.1
648,875 - OLJFJH_03390 0.37 -0.6
648,892 - OLJFJH_03390 0.41 +1.3
648,953 + OLJFJH_03390 0.55 -3.1
648,953 + OLJFJH_03390 0.55 +1.4
648,954 - OLJFJH_03390 0.55 -0.2
649,027 + OLJFJH_03390 0.72 +0.1
649,028 - OLJFJH_03390 0.73 -1.2
649,030 + OLJFJH_03390 0.73 -1.0
649,050 + OLJFJH_03390 0.78 +0.3
649,142 + -2.9
649,142 + -0.3
649,143 - -0.0
649,143 - -3.3
649,143 - -0.2
649,338 + -1.7
649,413 - -0.3
649,435 + -1.5
649,435 + -1.1
649,436 - +0.5
649,436 - +0.5
649,436 - +0.9
649,583 + +0.1
649,584 - -0.3
649,584 - -2.2

Or see this region's nucleotide sequence