Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03375 and OLJFJH_03380 are separated by 283 nucleotides OLJFJH_03380 and OLJFJH_03385 are separated by 43 nucleotides OLJFJH_03385 and OLJFJH_03390 are separated by 102 nucleotides OLJFJH_03390 and OLJFJH_03395 are separated by 440 nucleotides
OLJFJH_03375: OLJFJH_03375 - permease, at 645,627 to 647,159
_03375
OLJFJH_03380: OLJFJH_03380 - glutathione S-transferase, at 647,443 to 648,105
_03380
OLJFJH_03385: OLJFJH_03385 - redox-sensitive transcriptional activator SoxR, at 648,149 to 648,616
_03385
OLJFJH_03390: OLJFJH_03390 - superoxide response transcriptional regulator SoxS, at 648,719 to 649,144
_03390
OLJFJH_03395: OLJFJH_03395 - hypothetical protein, at 649,585 to 649,740
_03395
Position (kb)
648
649 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 647.236 kb on + strand at 647.266 kb on + strand at 647.267 kb on - strand at 647.334 kb on - strand at 647.334 kb on - strand at 647.343 kb on + strand at 647.343 kb on + strand at 647.344 kb on - strand at 647.344 kb on - strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.683 kb on - strand, within OLJFJH_03380 at 647.684 kb on + strand, within OLJFJH_03380 at 647.684 kb on + strand, within OLJFJH_03380 at 647.684 kb on + strand, within OLJFJH_03380 at 647.685 kb on - strand, within OLJFJH_03380 at 647.685 kb on - strand, within OLJFJH_03380 at 647.685 kb on - strand, within OLJFJH_03380 at 647.811 kb on - strand, within OLJFJH_03380 at 647.811 kb on - strand, within OLJFJH_03380 at 647.833 kb on + strand, within OLJFJH_03380 at 647.834 kb on - strand, within OLJFJH_03380 at 647.834 kb on - strand, within OLJFJH_03380 at 647.880 kb on - strand, within OLJFJH_03380 at 647.880 kb on - strand, within OLJFJH_03380 at 648.015 kb on - strand, within OLJFJH_03380 at 648.015 kb on - strand, within OLJFJH_03380 at 648.021 kb on + strand, within OLJFJH_03380 at 648.021 kb on + strand, within OLJFJH_03380 at 648.116 kb on + strand at 648.141 kb on - strand at 648.143 kb on - strand at 648.214 kb on + strand, within OLJFJH_03385 at 648.214 kb on + strand, within OLJFJH_03385 at 648.214 kb on + strand, within OLJFJH_03385 at 648.299 kb on - strand, within OLJFJH_03385 at 648.359 kb on - strand, within OLJFJH_03385 at 648.376 kb on - strand, within OLJFJH_03385 at 648.507 kb on - strand, within OLJFJH_03385 at 648.627 kb on - strand at 648.636 kb on - strand at 648.650 kb on - strand at 648.651 kb on + strand at 648.651 kb on + strand at 648.652 kb on - strand at 648.718 kb on + strand at 648.718 kb on + strand at 648.719 kb on - strand at 648.719 kb on - strand at 648.763 kb on + strand, within OLJFJH_03390 at 648.828 kb on + strand, within OLJFJH_03390 at 648.828 kb on + strand, within OLJFJH_03390 at 648.829 kb on - strand, within OLJFJH_03390 at 648.872 kb on + strand, within OLJFJH_03390 at 648.873 kb on - strand, within OLJFJH_03390 at 648.875 kb on - strand, within OLJFJH_03390 at 648.892 kb on - strand, within OLJFJH_03390 at 648.953 kb on + strand, within OLJFJH_03390 at 648.953 kb on + strand, within OLJFJH_03390 at 648.954 kb on - strand, within OLJFJH_03390 at 649.027 kb on + strand, within OLJFJH_03390 at 649.028 kb on - strand, within OLJFJH_03390 at 649.030 kb on + strand, within OLJFJH_03390 at 649.050 kb on + strand, within OLJFJH_03390 at 649.142 kb on + strand at 649.142 kb on + strand at 649.143 kb on - strand at 649.143 kb on - strand at 649.143 kb on - strand at 649.338 kb on + strand at 649.413 kb on - strand at 649.435 kb on + strand at 649.435 kb on + strand at 649.436 kb on - strand at 649.436 kb on - strand at 649.436 kb on - strand at 649.583 kb on + strand at 649.584 kb on - strand at 649.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 647,236 + +2.3 647,266 + +0.7 647,267 - -0.5 647,334 - +0.2 647,334 - -2.6 647,343 + +0.6 647,343 + -1.8 647,344 - +0.0 647,344 - +0.2 647,345 + -0.1 647,345 + -0.5 647,345 + +0.5 647,345 + -0.5 647,345 + +0.5 647,345 + -0.4 647,346 - +0.7 647,346 - -2.7 647,346 - +0.5 647,346 - -0.0 647,346 - +1.5 647,683 - OLJFJH_03380 0.36 +0.4 647,684 + OLJFJH_03380 0.36 -0.9 647,684 + OLJFJH_03380 0.36 +1.2 647,684 + OLJFJH_03380 0.36 -0.6 647,685 - OLJFJH_03380 0.37 +0.0 647,685 - OLJFJH_03380 0.37 -1.5 647,685 - OLJFJH_03380 0.37 -2.3 647,811 - OLJFJH_03380 0.56 -1.2 647,811 - OLJFJH_03380 0.56 +0.7 647,833 + OLJFJH_03380 0.59 -0.7 647,834 - OLJFJH_03380 0.59 -0.4 647,834 - OLJFJH_03380 0.59 -0.6 647,880 - OLJFJH_03380 0.66 +0.3 647,880 - OLJFJH_03380 0.66 +1.2 648,015 - OLJFJH_03380 0.86 -1.9 648,015 - OLJFJH_03380 0.86 +2.2 648,021 + OLJFJH_03380 0.87 +0.3 648,021 + OLJFJH_03380 0.87 -0.3 648,116 + +1.2 648,141 - -2.7 648,143 - -0.7 648,214 + OLJFJH_03385 0.14 -0.5 648,214 + OLJFJH_03385 0.14 -0.1 648,214 + OLJFJH_03385 0.14 +1.8 648,299 - OLJFJH_03385 0.32 +0.7 648,359 - OLJFJH_03385 0.45 +1.7 648,376 - OLJFJH_03385 0.49 +0.9 648,507 - OLJFJH_03385 0.76 -2.3 648,627 - -4.0 648,636 - +0.3 648,650 - -0.4 648,651 + +0.7 648,651 + +0.1 648,652 - +0.3 648,718 + -3.3 648,718 + -0.8 648,719 - -1.1 648,719 - -1.0 648,763 + OLJFJH_03390 0.10 +0.4 648,828 + OLJFJH_03390 0.26 -4.2 648,828 + OLJFJH_03390 0.26 +0.3 648,829 - OLJFJH_03390 0.26 +0.5 648,872 + OLJFJH_03390 0.36 +0.6 648,873 - OLJFJH_03390 0.36 -0.1 648,875 - OLJFJH_03390 0.37 -0.6 648,892 - OLJFJH_03390 0.41 +1.3 648,953 + OLJFJH_03390 0.55 -3.1 648,953 + OLJFJH_03390 0.55 +1.4 648,954 - OLJFJH_03390 0.55 -0.2 649,027 + OLJFJH_03390 0.72 +0.1 649,028 - OLJFJH_03390 0.73 -1.2 649,030 + OLJFJH_03390 0.73 -1.0 649,050 + OLJFJH_03390 0.78 +0.3 649,142 + -2.9 649,142 + -0.3 649,143 - -0.0 649,143 - -3.3 649,143 - -0.2 649,338 + -1.7 649,413 - -0.3 649,435 + -1.5 649,435 + -1.1 649,436 - +0.5 649,436 - +0.5 649,436 - +0.9 649,583 + +0.1 649,584 - -0.3 649,584 - -2.2
Or see this region's nucleotide sequence