Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03150 and OLJFJH_03155 are separated by 40 nucleotides OLJFJH_03155 and OLJFJH_03160 are separated by 789 nucleotides
OLJFJH_03150: OLJFJH_03150 - type VI secretion system contractile sheath large subunit, at 577,563 to 579,104
_03150
OLJFJH_03155: OLJFJH_03155 - type VI secretion system contractile sheath small subunit, at 579,145 to 579,642
_03155
OLJFJH_03160: OLJFJH_03160 - type IV secretion protein Rhs, at 580,432 to 585,396
_03160
Position (kb) 579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.148 kb on + strand, within OLJFJH_03150 at 578.221 kb on + strand, within OLJFJH_03150 at 578.221 kb on + strand, within OLJFJH_03150 at 578.222 kb on - strand, within OLJFJH_03150 at 578.222 kb on - strand, within OLJFJH_03150 at 578.222 kb on - strand, within OLJFJH_03150 at 578.257 kb on + strand, within OLJFJH_03150 at 578.335 kb on + strand, within OLJFJH_03150 at 578.378 kb on - strand, within OLJFJH_03150 at 578.395 kb on + strand, within OLJFJH_03150 at 578.396 kb on - strand, within OLJFJH_03150 at 578.396 kb on - strand, within OLJFJH_03150 at 578.396 kb on - strand, within OLJFJH_03150 at 578.480 kb on + strand, within OLJFJH_03150 at 578.481 kb on - strand, within OLJFJH_03150 at 578.507 kb on + strand, within OLJFJH_03150 at 578.508 kb on - strand, within OLJFJH_03150 at 578.552 kb on - strand, within OLJFJH_03150 at 578.596 kb on + strand, within OLJFJH_03150 at 578.636 kb on + strand, within OLJFJH_03150 at 578.637 kb on - strand, within OLJFJH_03150 at 578.726 kb on + strand, within OLJFJH_03150 at 578.727 kb on - strand, within OLJFJH_03150 at 578.730 kb on + strand, within OLJFJH_03150 at 578.856 kb on - strand, within OLJFJH_03150 at 578.886 kb on - strand, within OLJFJH_03150 at 579.417 kb on + strand, within OLJFJH_03155 at 579.643 kb on - strand at 580.243 kb on - strand at 580.288 kb on - strand at 580.433 kb on + strand at 580.440 kb on - strand at 580.456 kb on - strand at 580.492 kb on + strand at 580.492 kb on + strand at 580.492 kb on + strand at 580.492 kb on + strand at 580.492 kb on + strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.493 kb on - strand at 580.494 kb on + strand at 580.494 kb on + strand at 580.494 kb on + strand at 580.494 kb on + strand at 580.494 kb on + strand at 580.496 kb on + strand at 580.515 kb on + strand at 580.550 kb on + strand at 580.551 kb on - strand at 580.568 kb on + strand at 580.568 kb on + strand at 580.568 kb on + strand at 580.569 kb on - strand at 580.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 578,148 + OLJFJH_03150 0.38 -1.4 578,221 + OLJFJH_03150 0.43 +0.4 578,221 + OLJFJH_03150 0.43 -0.0 578,222 - OLJFJH_03150 0.43 +0.4 578,222 - OLJFJH_03150 0.43 -0.3 578,222 - OLJFJH_03150 0.43 +0.6 578,257 + OLJFJH_03150 0.45 +0.7 578,335 + OLJFJH_03150 0.50 -0.2 578,378 - OLJFJH_03150 0.53 -0.0 578,395 + OLJFJH_03150 0.54 +1.7 578,396 - OLJFJH_03150 0.54 +0.5 578,396 - OLJFJH_03150 0.54 +0.3 578,396 - OLJFJH_03150 0.54 +1.1 578,480 + OLJFJH_03150 0.59 -0.2 578,481 - OLJFJH_03150 0.60 +0.0 578,507 + OLJFJH_03150 0.61 -3.0 578,508 - OLJFJH_03150 0.61 -0.7 578,552 - OLJFJH_03150 0.64 -0.1 578,596 + OLJFJH_03150 0.67 -1.7 578,636 + OLJFJH_03150 0.70 +0.8 578,637 - OLJFJH_03150 0.70 +0.6 578,726 + OLJFJH_03150 0.75 +2.6 578,727 - OLJFJH_03150 0.75 +0.8 578,730 + OLJFJH_03150 0.76 -0.2 578,856 - OLJFJH_03150 0.84 +1.1 578,886 - OLJFJH_03150 0.86 -0.9 579,417 + OLJFJH_03155 0.55 +0.8 579,643 - -1.7 580,243 - +0.9 580,288 - -0.9 580,433 + -1.0 580,440 - +1.5 580,456 - +1.1 580,492 + -2.6 580,492 + -1.8 580,492 + +1.5 580,492 + +0.2 580,492 + -0.1 580,493 - -0.8 580,493 - +3.0 580,493 - -1.4 580,493 - +0.2 580,493 - -2.1 580,493 - -1.1 580,493 - +0.5 580,493 - -0.0 580,494 + -1.8 580,494 + +0.1 580,494 + -0.8 580,494 + -3.4 580,494 + -0.1 580,496 + -0.5 580,515 + +1.6 580,550 + -0.5 580,551 - +1.2 580,568 + +0.6 580,568 + +1.5 580,568 + +0.7 580,569 - -0.0 580,621 - -3.2
Or see this region's nucleotide sequence