Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03135 and OLJFJH_03140 overlap by 1 nucleotides OLJFJH_03140 and OLJFJH_03145 overlap by 4 nucleotides
OLJFJH_03135: OLJFJH_03135 - OmpA family, at 573,867 to 575,522
_03135
OLJFJH_03140: OLJFJH_03140 - type VI secretion system protein TssL short form, at 575,522 to 576,199
_03140
OLJFJH_03145: OLJFJH_03145 - type VI secretion system baseplate subunit TssK, at 576,196 to 577,545
_03145
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 574.863 kb on + strand, within OLJFJH_03135 at 574.938 kb on + strand, within OLJFJH_03135 at 574.938 kb on + strand, within OLJFJH_03135 at 574.939 kb on - strand, within OLJFJH_03135 at 574.939 kb on - strand, within OLJFJH_03135 at 574.939 kb on - strand, within OLJFJH_03135 at 575.014 kb on - strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.119 kb on + strand, within OLJFJH_03135 at 575.120 kb on - strand, within OLJFJH_03135 at 575.120 kb on - strand, within OLJFJH_03135 at 575.120 kb on - strand, within OLJFJH_03135 at 575.120 kb on - strand, within OLJFJH_03135 at 575.120 kb on - strand, within OLJFJH_03135 at 575.184 kb on - strand, within OLJFJH_03135 at 575.305 kb on - strand, within OLJFJH_03135 at 575.351 kb on + strand, within OLJFJH_03135 at 575.447 kb on - strand at 575.490 kb on + strand at 575.490 kb on + strand at 575.491 kb on - strand at 575.491 kb on - strand at 575.493 kb on + strand at 575.493 kb on + strand at 575.494 kb on - strand at 575.494 kb on - strand at 575.494 kb on - strand at 575.494 kb on - strand at 575.507 kb on + strand at 575.552 kb on + strand at 575.552 kb on + strand at 575.553 kb on - strand at 575.769 kb on + strand, within OLJFJH_03140 at 575.770 kb on - strand, within OLJFJH_03140 at 576.012 kb on + strand, within OLJFJH_03140 at 576.100 kb on - strand, within OLJFJH_03140 at 576.254 kb on + strand at 576.254 kb on + strand at 576.254 kb on + strand at 576.255 kb on - strand at 576.255 kb on - strand at 576.255 kb on - strand at 576.373 kb on - strand, within OLJFJH_03145 at 576.401 kb on + strand, within OLJFJH_03145 at 576.402 kb on - strand, within OLJFJH_03145 at 576.478 kb on - strand, within OLJFJH_03145 at 576.478 kb on - strand, within OLJFJH_03145 at 576.498 kb on - strand, within OLJFJH_03145 at 576.645 kb on + strand, within OLJFJH_03145 at 576.646 kb on - strand, within OLJFJH_03145 at 576.679 kb on - strand, within OLJFJH_03145 at 576.808 kb on - strand, within OLJFJH_03145 at 577.089 kb on - strand, within OLJFJH_03145 at 577.089 kb on - strand, within OLJFJH_03145
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 574,863 + OLJFJH_03135 0.60 -0.6 574,938 + OLJFJH_03135 0.65 +3.6 574,938 + OLJFJH_03135 0.65 +0.1 574,939 - OLJFJH_03135 0.65 -0.2 574,939 - OLJFJH_03135 0.65 +0.5 574,939 - OLJFJH_03135 0.65 +0.3 575,014 - OLJFJH_03135 0.69 -0.2 575,119 + OLJFJH_03135 0.76 -0.8 575,119 + OLJFJH_03135 0.76 +0.6 575,119 + OLJFJH_03135 0.76 -2.2 575,119 + OLJFJH_03135 0.76 +2.9 575,119 + OLJFJH_03135 0.76 +1.9 575,119 + OLJFJH_03135 0.76 +0.7 575,119 + OLJFJH_03135 0.76 +0.8 575,120 - OLJFJH_03135 0.76 +0.2 575,120 - OLJFJH_03135 0.76 -1.0 575,120 - OLJFJH_03135 0.76 +0.7 575,120 - OLJFJH_03135 0.76 -0.6 575,120 - OLJFJH_03135 0.76 -1.2 575,184 - OLJFJH_03135 0.80 +0.5 575,305 - OLJFJH_03135 0.87 +0.7 575,351 + OLJFJH_03135 0.90 +0.2 575,447 - -0.2 575,490 + -1.7 575,490 + -0.9 575,491 - -1.8 575,491 - +0.0 575,493 + +0.5 575,493 + -0.2 575,494 - -1.6 575,494 - -0.1 575,494 - +0.9 575,494 - +0.9 575,507 + -1.2 575,552 + +0.2 575,552 + +0.4 575,553 - -0.4 575,769 + OLJFJH_03140 0.36 +0.2 575,770 - OLJFJH_03140 0.37 +0.9 576,012 + OLJFJH_03140 0.72 +1.0 576,100 - OLJFJH_03140 0.85 +3.3 576,254 + +1.0 576,254 + -1.2 576,254 + -0.8 576,255 - -0.8 576,255 - -0.1 576,255 - +1.9 576,373 - OLJFJH_03145 0.13 +0.5 576,401 + OLJFJH_03145 0.15 +0.0 576,402 - OLJFJH_03145 0.15 -1.0 576,478 - OLJFJH_03145 0.21 +0.5 576,478 - OLJFJH_03145 0.21 +0.4 576,498 - OLJFJH_03145 0.22 -1.1 576,645 + OLJFJH_03145 0.33 +0.2 576,646 - OLJFJH_03145 0.33 -1.6 576,679 - OLJFJH_03145 0.36 +0.1 576,808 - OLJFJH_03145 0.45 -2.9 577,089 - OLJFJH_03145 0.66 +1.0 577,089 - OLJFJH_03145 0.66 -0.3
Or see this region's nucleotide sequence