Strain Fitness in Erwinia amylovora T8 around OLJFJH_02990

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02985 and OLJFJH_02990 are separated by 96 nucleotidesOLJFJH_02990 and OLJFJH_02995 are separated by 888 nucleotides OLJFJH_02985: OLJFJH_02985 - methyltransferase, at 539,975 to 541,030 _02985 OLJFJH_02990: OLJFJH_02990 - hypothetical protein, at 541,127 to 541,708 _02990 OLJFJH_02995: OLJFJH_02995 - carbamoyl-phosphate synthase, at 542,597 to 543,763 _02995 Position (kb) 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1at 540.134 kb on + strand, within OLJFJH_02985at 540.275 kb on + strand, within OLJFJH_02985at 540.354 kb on - strand, within OLJFJH_02985at 540.392 kb on + strand, within OLJFJH_02985at 540.512 kb on - strand, within OLJFJH_02985at 540.612 kb on - strand, within OLJFJH_02985at 541.278 kb on - strand, within OLJFJH_02990at 541.638 kb on + strand, within OLJFJH_02990at 541.692 kb on + strandat 541.997 kb on + strandat 542.386 kb on - strandat 542.636 kb on - strandat 542.695 kb on + strandat 542.696 kb on - strandat 542.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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540,134 + OLJFJH_02985 0.15 +0.5
540,275 + OLJFJH_02985 0.28 -0.2
540,354 - OLJFJH_02985 0.36 +0.7
540,392 + OLJFJH_02985 0.39 -2.1
540,512 - OLJFJH_02985 0.51 +0.3
540,612 - OLJFJH_02985 0.60 -0.7
541,278 - OLJFJH_02990 0.26 +1.6
541,638 + OLJFJH_02990 0.88 +0.3
541,692 + -0.8
541,997 + -1.7
542,386 - -1.5
542,636 - -0.8
542,695 + -3.6
542,696 - -1.4
542,698 + +0.5

Or see this region's nucleotide sequence