Strain Fitness in Erwinia amylovora T8 around OLJFJH_02905

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02895 and OLJFJH_02900 are separated by 13 nucleotidesOLJFJH_02900 and OLJFJH_02905 overlap by 4 nucleotidesOLJFJH_02905 and OLJFJH_02910 are separated by 873 nucleotides OLJFJH_02895: OLJFJH_02895 - DNA topoisomerase III, at 518,966 to 520,975 _02895 OLJFJH_02900: OLJFJH_02900 - hypothetical protein, at 520,989 to 521,546 _02900 OLJFJH_02905: OLJFJH_02905 - TIGR03761 family integrating conjugative element protein, at 521,543 to 522,298 _02905 OLJFJH_02910: OLJFJH_02910 - STY4528 family pathogenicity island replication protein, at 523,172 to 524,404 _02910 Position (kb) 521 522 523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 520.546 kb on + strand, within OLJFJH_02895at 520.615 kb on + strand, within OLJFJH_02895at 520.711 kb on + strand, within OLJFJH_02895at 520.711 kb on + strand, within OLJFJH_02895at 520.715 kb on + strand, within OLJFJH_02895at 520.735 kb on + strand, within OLJFJH_02895at 520.749 kb on - strand, within OLJFJH_02895at 520.847 kb on + strandat 520.848 kb on - strandat 520.848 kb on - strandat 520.857 kb on - strandat 520.922 kb on + strandat 520.933 kb on + strandat 520.934 kb on - strandat 520.934 kb on - strandat 521.079 kb on + strand, within OLJFJH_02900at 521.079 kb on + strand, within OLJFJH_02900at 521.080 kb on - strand, within OLJFJH_02900at 521.080 kb on - strand, within OLJFJH_02900at 521.080 kb on - strand, within OLJFJH_02900at 521.086 kb on + strand, within OLJFJH_02900at 521.086 kb on + strand, within OLJFJH_02900at 521.087 kb on - strand, within OLJFJH_02900at 521.087 kb on - strand, within OLJFJH_02900at 521.121 kb on + strand, within OLJFJH_02900at 521.164 kb on + strand, within OLJFJH_02900at 521.168 kb on - strand, within OLJFJH_02900at 521.280 kb on - strand, within OLJFJH_02900at 521.285 kb on + strand, within OLJFJH_02900at 521.285 kb on + strand, within OLJFJH_02900at 521.285 kb on + strand, within OLJFJH_02900at 521.555 kb on - strandat 521.765 kb on + strand, within OLJFJH_02905at 522.128 kb on - strand, within OLJFJH_02905at 522.193 kb on - strand, within OLJFJH_02905at 522.203 kb on + strand, within OLJFJH_02905at 522.227 kb on + strandat 522.262 kb on + strandat 522.331 kb on + strandat 522.337 kb on + strandat 522.338 kb on - strandat 522.338 kb on - strandat 522.360 kb on + strandat 522.412 kb on + strandat 522.413 kb on - strandat 522.429 kb on + strandat 522.465 kb on + strandat 522.556 kb on - strandat 522.568 kb on - strandat 522.619 kb on - strandat 522.632 kb on - strandat 522.669 kb on + strandat 522.744 kb on + strandat 522.744 kb on + strandat 522.781 kb on - strandat 522.799 kb on - strandat 522.807 kb on + strandat 522.811 kb on + strandat 522.811 kb on + strandat 522.831 kb on + strandat 522.831 kb on + strandat 522.832 kb on - strandat 522.855 kb on + strandat 522.856 kb on - strandat 522.874 kb on + strandat 523.156 kb on - strandat 523.156 kb on - strandat 523.250 kb on + strandat 523.250 kb on + strandat 523.250 kb on + strandat 523.251 kb on - strandat 523.251 kb on - strandat 523.251 kb on - strandat 523.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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520,546 + OLJFJH_02895 0.79 +0.2
520,615 + OLJFJH_02895 0.82 +2.9
520,711 + OLJFJH_02895 0.87 -4.4
520,711 + OLJFJH_02895 0.87 -0.4
520,715 + OLJFJH_02895 0.87 +0.0
520,735 + OLJFJH_02895 0.88 -2.9
520,749 - OLJFJH_02895 0.89 -0.8
520,847 + +0.7
520,848 - -0.5
520,848 - +2.6
520,857 - -2.4
520,922 + -0.0
520,933 + +0.5
520,934 - -0.2
520,934 - +1.0
521,079 + OLJFJH_02900 0.16 -0.3
521,079 + OLJFJH_02900 0.16 -3.1
521,080 - OLJFJH_02900 0.16 +0.7
521,080 - OLJFJH_02900 0.16 +2.2
521,080 - OLJFJH_02900 0.16 -1.1
521,086 + OLJFJH_02900 0.17 -0.7
521,086 + OLJFJH_02900 0.17 +0.0
521,087 - OLJFJH_02900 0.18 -0.9
521,087 - OLJFJH_02900 0.18 -0.9
521,121 + OLJFJH_02900 0.24 +0.9
521,164 + OLJFJH_02900 0.31 +0.6
521,168 - OLJFJH_02900 0.32 -0.4
521,280 - OLJFJH_02900 0.52 +0.9
521,285 + OLJFJH_02900 0.53 -1.5
521,285 + OLJFJH_02900 0.53 -0.1
521,285 + OLJFJH_02900 0.53 -0.3
521,555 - +0.4
521,765 + OLJFJH_02905 0.29 +1.9
522,128 - OLJFJH_02905 0.77 +0.7
522,193 - OLJFJH_02905 0.86 +0.3
522,203 + OLJFJH_02905 0.87 -0.5
522,227 + -1.9
522,262 + +3.3
522,331 + -0.4
522,337 + +0.1
522,338 - +0.1
522,338 - -0.1
522,360 + -0.2
522,412 + -0.9
522,413 - +1.0
522,429 + +4.2
522,465 + +1.0
522,556 - -1.1
522,568 - -2.6
522,619 - +0.4
522,632 - -2.5
522,669 + -0.6
522,744 + -0.5
522,744 + -0.4
522,781 - -1.3
522,799 - -1.2
522,807 + -0.4
522,811 + -1.1
522,811 + +1.1
522,831 + +1.3
522,831 + -0.0
522,832 - -0.4
522,855 + +0.2
522,856 - +1.4
522,874 + +0.1
523,156 - +1.3
523,156 - +0.5
523,250 + +0.5
523,250 + -0.7
523,250 + +0.7
523,251 - +0.9
523,251 - -3.1
523,251 - -0.3
523,253 - -1.5

Or see this region's nucleotide sequence