Strain Fitness in Erwinia amylovora T8 around OLJFJH_02865

Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02855 and OLJFJH_02860 are separated by 2 nucleotidesOLJFJH_02860 and OLJFJH_02865 overlap by 4 nucleotidesOLJFJH_02865 and OLJFJH_02870 are separated by 169 nucleotidesOLJFJH_02870 and OLJFJH_02875 are separated by 58 nucleotides OLJFJH_02855: OLJFJH_02855 - TIGR03759 family integrating conjugative element protein, at 514,255 to 514,962 _02855 OLJFJH_02860: OLJFJH_02860 - hypothetical protein, at 514,965 to 515,717 _02860 OLJFJH_02865: OLJFJH_02865 - PilL N-terminal domain-containing protein, at 515,714 to 516,343 _02865 OLJFJH_02870: OLJFJH_02870 - DUF29 domain-containing protein, at 516,513 to 516,944 _02870 OLJFJH_02875: OLJFJH_02875 - single-stranded DNA-binding protein, at 517,003 to 517,548 _02875 Position (kb) 515 516 517Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 514.783 kb on + strand, within OLJFJH_02855at 514.784 kb on - strand, within OLJFJH_02855at 514.803 kb on - strand, within OLJFJH_02855at 514.866 kb on + strand, within OLJFJH_02855at 514.867 kb on - strand, within OLJFJH_02855at 514.867 kb on - strand, within OLJFJH_02855at 514.943 kb on - strandat 514.980 kb on + strandat 515.049 kb on + strand, within OLJFJH_02860at 515.094 kb on - strand, within OLJFJH_02860at 515.095 kb on + strand, within OLJFJH_02860at 515.096 kb on - strand, within OLJFJH_02860at 515.168 kb on + strand, within OLJFJH_02860at 515.169 kb on - strand, within OLJFJH_02860at 515.169 kb on - strand, within OLJFJH_02860at 515.193 kb on + strand, within OLJFJH_02860at 515.194 kb on - strand, within OLJFJH_02860at 515.194 kb on - strand, within OLJFJH_02860at 515.291 kb on + strand, within OLJFJH_02860at 515.292 kb on - strand, within OLJFJH_02860at 515.415 kb on + strand, within OLJFJH_02860at 515.456 kb on + strand, within OLJFJH_02860at 515.456 kb on + strand, within OLJFJH_02860at 515.456 kb on + strand, within OLJFJH_02860at 515.456 kb on + strand, within OLJFJH_02860at 515.549 kb on + strand, within OLJFJH_02860at 515.550 kb on - strand, within OLJFJH_02860at 515.608 kb on - strand, within OLJFJH_02860at 515.632 kb on + strand, within OLJFJH_02860at 515.632 kb on + strand, within OLJFJH_02860at 515.653 kb on - strandat 515.871 kb on - strand, within OLJFJH_02865at 515.978 kb on + strand, within OLJFJH_02865at 515.978 kb on + strand, within OLJFJH_02865at 515.978 kb on + strand, within OLJFJH_02865at 515.979 kb on - strand, within OLJFJH_02865at 516.080 kb on - strand, within OLJFJH_02865at 516.083 kb on + strand, within OLJFJH_02865at 516.083 kb on + strand, within OLJFJH_02865at 516.083 kb on + strand, within OLJFJH_02865at 516.084 kb on - strand, within OLJFJH_02865at 516.157 kb on - strand, within OLJFJH_02865at 516.184 kb on - strand, within OLJFJH_02865at 516.184 kb on - strand, within OLJFJH_02865at 516.271 kb on + strand, within OLJFJH_02865at 516.365 kb on + strandat 516.366 kb on - strandat 516.409 kb on + strandat 516.462 kb on + strandat 516.560 kb on + strand, within OLJFJH_02870at 516.561 kb on - strand, within OLJFJH_02870at 516.561 kb on - strand, within OLJFJH_02870at 516.633 kb on + strand, within OLJFJH_02870at 516.701 kb on + strand, within OLJFJH_02870at 516.701 kb on + strand, within OLJFJH_02870at 516.701 kb on + strand, within OLJFJH_02870at 516.701 kb on + strand, within OLJFJH_02870at 516.702 kb on - strand, within OLJFJH_02870at 516.714 kb on + strand, within OLJFJH_02870at 516.714 kb on + strand, within OLJFJH_02870at 516.715 kb on - strand, within OLJFJH_02870at 516.715 kb on - strand, within OLJFJH_02870at 516.717 kb on - strand, within OLJFJH_02870at 516.765 kb on - strand, within OLJFJH_02870at 517.014 kb on - strandat 517.015 kb on + strandat 517.016 kb on - strandat 517.057 kb on + strandat 517.057 kb on + strandat 517.058 kb on - strand, within OLJFJH_02875at 517.254 kb on + strand, within OLJFJH_02875at 517.255 kb on - strand, within OLJFJH_02875at 517.255 kb on - strand, within OLJFJH_02875at 517.314 kb on - strand, within OLJFJH_02875

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
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514,783 + OLJFJH_02855 0.75 +0.2
514,784 - OLJFJH_02855 0.75 +0.8
514,803 - OLJFJH_02855 0.77 -0.2
514,866 + OLJFJH_02855 0.86 +0.1
514,867 - OLJFJH_02855 0.86 -0.3
514,867 - OLJFJH_02855 0.86 -0.1
514,943 - +0.3
514,980 + -2.0
515,049 + OLJFJH_02860 0.11 +1.3
515,094 - OLJFJH_02860 0.17 +0.3
515,095 + OLJFJH_02860 0.17 +0.9
515,096 - OLJFJH_02860 0.17 +0.3
515,168 + OLJFJH_02860 0.27 +0.1
515,169 - OLJFJH_02860 0.27 -1.1
515,169 - OLJFJH_02860 0.27 +1.5
515,193 + OLJFJH_02860 0.30 -0.4
515,194 - OLJFJH_02860 0.30 -1.0
515,194 - OLJFJH_02860 0.30 +3.0
515,291 + OLJFJH_02860 0.43 +0.1
515,292 - OLJFJH_02860 0.43 +0.6
515,415 + OLJFJH_02860 0.60 -1.9
515,456 + OLJFJH_02860 0.65 +0.5
515,456 + OLJFJH_02860 0.65 -0.7
515,456 + OLJFJH_02860 0.65 -3.9
515,456 + OLJFJH_02860 0.65 -0.4
515,549 + OLJFJH_02860 0.78 +1.2
515,550 - OLJFJH_02860 0.78 -0.2
515,608 - OLJFJH_02860 0.85 +1.1
515,632 + OLJFJH_02860 0.89 +0.3
515,632 + OLJFJH_02860 0.89 +0.3
515,653 - +0.8
515,871 - OLJFJH_02865 0.25 +1.1
515,978 + OLJFJH_02865 0.42 -0.5
515,978 + OLJFJH_02865 0.42 -4.2
515,978 + OLJFJH_02865 0.42 +7.5
515,979 - OLJFJH_02865 0.42 +0.2
516,080 - OLJFJH_02865 0.58 +1.6
516,083 + OLJFJH_02865 0.59 -3.0
516,083 + OLJFJH_02865 0.59 +0.8
516,083 + OLJFJH_02865 0.59 +0.5
516,084 - OLJFJH_02865 0.59 -2.1
516,157 - OLJFJH_02865 0.70 +2.7
516,184 - OLJFJH_02865 0.75 +0.4
516,184 - OLJFJH_02865 0.75 +1.0
516,271 + OLJFJH_02865 0.88 +0.5
516,365 + +1.4
516,366 - +0.4
516,409 + +0.4
516,462 + +2.2
516,560 + OLJFJH_02870 0.11 -0.8
516,561 - OLJFJH_02870 0.11 -0.4
516,561 - OLJFJH_02870 0.11 -0.9
516,633 + OLJFJH_02870 0.28 +2.3
516,701 + OLJFJH_02870 0.44 +0.6
516,701 + OLJFJH_02870 0.44 -0.5
516,701 + OLJFJH_02870 0.44 -0.5
516,701 + OLJFJH_02870 0.44 +0.1
516,702 - OLJFJH_02870 0.44 -2.4
516,714 + OLJFJH_02870 0.47 +1.5
516,714 + OLJFJH_02870 0.47 -0.2
516,715 - OLJFJH_02870 0.47 -1.7
516,715 - OLJFJH_02870 0.47 +0.8
516,717 - OLJFJH_02870 0.47 -1.4
516,765 - OLJFJH_02870 0.58 -2.1
517,014 - +0.4
517,015 + +1.8
517,016 - -2.3
517,057 + +0.3
517,057 + +1.7
517,058 - OLJFJH_02875 0.10 -1.7
517,254 + OLJFJH_02875 0.46 +0.4
517,255 - OLJFJH_02875 0.46 +0.9
517,255 - OLJFJH_02875 0.46 +0.9
517,314 - OLJFJH_02875 0.57 -0.8

Or see this region's nucleotide sequence