Experiment: Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02455 and OLJFJH_02460 are separated by 1 nucleotides OLJFJH_02460 and OLJFJH_02465 are separated by 65 nucleotides OLJFJH_02465 and OLJFJH_02470 are separated by 77 nucleotides
OLJFJH_02455: OLJFJH_02455 - methyl-accepting chemotaxis protein, at 438,360 to 440,294
_02455
OLJFJH_02460: OLJFJH_02460 - biofilm peroxide resistance protein BsmA, at 440,296 to 440,664
_02460
OLJFJH_02465: OLJFJH_02465 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 440,730 to 441,467
_02465
OLJFJH_02470: OLJFJH_02470 - ribonuclease R, at 441,545 to 443,977
_02470
Position (kb) 440
441
442 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 440.067 kb on - strand, within OLJFJH_02455 at 440.109 kb on - strand at 440.303 kb on - strand at 440.304 kb on + strand at 440.308 kb on - strand at 440.314 kb on + strand at 440.314 kb on + strand at 440.314 kb on + strand at 440.314 kb on + strand at 440.314 kb on + strand at 440.314 kb on + strand at 440.314 kb on + strand at 440.343 kb on + strand, within OLJFJH_02460 at 440.363 kb on + strand, within OLJFJH_02460 at 440.395 kb on + strand, within OLJFJH_02460 at 440.563 kb on + strand, within OLJFJH_02460 at 440.564 kb on - strand, within OLJFJH_02460 at 440.566 kb on + strand, within OLJFJH_02460 at 440.627 kb on + strand, within OLJFJH_02460 at 440.627 kb on + strand, within OLJFJH_02460 at 440.627 kb on + strand, within OLJFJH_02460 at 440.627 kb on + strand, within OLJFJH_02460 at 440.627 kb on + strand, within OLJFJH_02460 at 440.628 kb on - strand at 440.628 kb on - strand at 440.628 kb on - strand at 440.629 kb on + strand at 440.630 kb on - strand at 440.630 kb on - strand at 440.630 kb on - strand at 440.675 kb on + strand at 440.675 kb on + strand at 440.675 kb on + strand at 440.679 kb on + strand at 440.727 kb on + strand at 440.727 kb on + strand at 440.727 kb on + strand at 440.727 kb on + strand at 440.728 kb on - strand at 440.728 kb on - strand at 440.731 kb on + strand at 440.990 kb on + strand, within OLJFJH_02465 at 440.991 kb on - strand, within OLJFJH_02465 at 440.991 kb on - strand, within OLJFJH_02465 at 441.132 kb on - strand, within OLJFJH_02465 at 441.230 kb on - strand, within OLJFJH_02465 at 441.258 kb on - strand, within OLJFJH_02465 at 441.507 kb on - strand at 441.788 kb on - strand at 441.820 kb on + strand, within OLJFJH_02470 at 441.820 kb on + strand, within OLJFJH_02470 at 441.833 kb on - strand, within OLJFJH_02470 at 441.959 kb on + strand, within OLJFJH_02470 at 442.060 kb on + strand, within OLJFJH_02470 at 442.060 kb on + strand, within OLJFJH_02470 at 442.204 kb on + strand, within OLJFJH_02470 at 442.204 kb on + strand, within OLJFJH_02470 at 442.227 kb on + strand, within OLJFJH_02470 at 442.227 kb on + strand, within OLJFJH_02470 at 442.227 kb on + strand, within OLJFJH_02470 at 442.227 kb on + strand, within OLJFJH_02470 at 442.228 kb on - strand, within OLJFJH_02470 at 442.228 kb on - strand, within OLJFJH_02470 at 442.228 kb on - strand, within OLJFJH_02470 at 442.247 kb on + strand, within OLJFJH_02470 at 442.248 kb on - strand, within OLJFJH_02470 at 442.279 kb on + strand, within OLJFJH_02470 at 442.279 kb on + strand, within OLJFJH_02470 at 442.280 kb on - strand, within OLJFJH_02470 at 442.291 kb on - strand, within OLJFJH_02470
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:cocktail;Temp:28;Samp:14-8 remove 440,067 - OLJFJH_02455 0.88 +4.3 440,109 - -1.1 440,303 - -2.4 440,304 + -3.3 440,308 - +0.2 440,314 + +0.5 440,314 + -0.3 440,314 + -2.4 440,314 + -0.1 440,314 + -2.4 440,314 + +0.0 440,314 + -0.1 440,343 + OLJFJH_02460 0.13 -2.7 440,363 + OLJFJH_02460 0.18 -3.0 440,395 + OLJFJH_02460 0.27 -1.5 440,563 + OLJFJH_02460 0.72 -0.2 440,564 - OLJFJH_02460 0.73 -2.3 440,566 + OLJFJH_02460 0.73 +1.1 440,627 + OLJFJH_02460 0.90 +0.8 440,627 + OLJFJH_02460 0.90 -0.2 440,627 + OLJFJH_02460 0.90 +0.7 440,627 + OLJFJH_02460 0.90 +0.2 440,627 + OLJFJH_02460 0.90 +0.6 440,628 - -1.6 440,628 - +0.7 440,628 - -0.7 440,629 + +0.5 440,630 - -1.8 440,630 - -2.8 440,630 - -2.9 440,675 + -0.9 440,675 + +0.3 440,675 + +0.6 440,679 + +0.4 440,727 + +1.0 440,727 + +1.9 440,727 + -0.9 440,727 + -1.4 440,728 - +0.4 440,728 - -1.5 440,731 + -2.4 440,990 + OLJFJH_02465 0.35 -2.4 440,991 - OLJFJH_02465 0.35 -0.1 440,991 - OLJFJH_02465 0.35 +0.2 441,132 - OLJFJH_02465 0.54 -0.2 441,230 - OLJFJH_02465 0.68 +6.3 441,258 - OLJFJH_02465 0.72 +0.7 441,507 - -0.3 441,788 - -2.7 441,820 + OLJFJH_02470 0.11 -0.7 441,820 + OLJFJH_02470 0.11 -1.8 441,833 - OLJFJH_02470 0.12 -0.2 441,959 + OLJFJH_02470 0.17 +0.1 442,060 + OLJFJH_02470 0.21 -0.5 442,060 + OLJFJH_02470 0.21 -0.3 442,204 + OLJFJH_02470 0.27 +0.5 442,204 + OLJFJH_02470 0.27 +0.1 442,227 + OLJFJH_02470 0.28 -0.6 442,227 + OLJFJH_02470 0.28 +1.1 442,227 + OLJFJH_02470 0.28 -1.4 442,227 + OLJFJH_02470 0.28 -2.8 442,228 - OLJFJH_02470 0.28 +1.1 442,228 - OLJFJH_02470 0.28 -0.7 442,228 - OLJFJH_02470 0.28 -4.3 442,247 + OLJFJH_02470 0.29 +1.2 442,248 - OLJFJH_02470 0.29 -1.0 442,279 + OLJFJH_02470 0.30 -0.2 442,279 + OLJFJH_02470 0.30 -0.9 442,280 - OLJFJH_02470 0.30 -2.0 442,291 - OLJFJH_02470 0.31 +0.1
Or see this region's nucleotide sequence